D. rerio Gene: shox - ENSDARG00000025891 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025891
Nameshox
Descriptionshort stature homeobox [Source:ZFIN;Acc:ZDB-GENE-051030-21]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-134k13.1, zgc:123182

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.80e3
  • 1.80e3
  • 4.87e3
  • 1.18e4
  • 1.83e4
  • 1.86e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000035Larval:Protruding-mouth
2.28e3
  • 2.28e3
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
3.60e3
  • 3.60e3
  • 1.33e4
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.86e3
  • 4.86e3
  • 1.44e4
AEIR
  • AEIR
  • AEIR
UBERON:0001774skeletal muscle of trunk
  • ZFS:0000035Larval:Protruding-mouth
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:0004752palatoquadrate cartilage
  • ZFS:0000035Larval:Protruding-mouth
8.88e3
  • 8.88e3
AEIR
  • AEIR
UBERON:0011610ceratohyal cartilage
  • ZFS:0000035Larval:Protruding-mouth
9.25e3
  • 9.25e3
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.82e3
  • 9.82e3
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
9.86e3
  • 9.86e3
  • 1.27e4
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.04e4
  • 1.04e4
  • 1.11e4
AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.06e4
  • 1.06e4
  • 1.20e4
AEIR
  • AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • ZFS:0000035Larval:Protruding-mouth
1.11e4
  • 1.11e4
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.18e4
  • 1.18e4
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
1.18e4
  • 1.18e4
  • 1.27e4
  • 1.27e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004362pharyngeal arch 1
  • ZFS:0000033Hatching:Long-pec
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000029Pharyngula:Prim-5
1.30e4
  • 1.30e4
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000035Larval:Protruding-mouth
1.36e4
  • 1.36e4
AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000029Pharyngula:Prim-5
1.37e4
  • 1.37e4
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.43e4
  • 1.43e4
AEIR
  • AEIR
UBERON:0003107Meckel's cartilage
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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