D. rerio Gene: pnx - ENSDARG00000025899 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000025899
Namepnx
Descriptionposterior neuron-specific homeobox [Source:ZFIN;Acc:ZDB-GENE-030328-42]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
5.49e3
  • 5.49e3
  • 7.67e3
  • 1.21e4
  • 1.24e4
  • 1.75e4
81.63
  • 81.63
  • 74.34
  • 59.41
  • 58.63
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000530primary neuron
  • ZFS:0000023Segmentation:1-4 somites
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
9.96e3
  • 9.96e3
  • 1.12e4
66.66
  • 66.66
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0006601presumptive ectoderm
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
1.05e4
  • 1.05e4
  • 1.33e4
64.99
  • 64.99
  • 55.55
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
1.15e4
  • 1.15e4
  • 1.41e4
  • 1.47e4
  • 1.67e4
  • 1.75e4
  • 2.12e4
61.53
  • 61.53
  • 52.83
  • 50.81
  • 44.19
  • 41.44
  • 29.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.20e4
  • 1.20e4
59.91
  • 59.91
AEIR
  • AEIR
CL:0000533primary motor neuron
  • ZFS:0000023Segmentation:1-4 somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.53
  • 51.53
AEIR
  • AEIR
UBERON:0003076posterior neural tube
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000247Rohon-Beard neuron
  • ZFS:0000023Segmentation:1-4 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.60e4
  • 1.60e4
46.27
  • 46.27
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.55e4
  • 2.55e4
14.74
  • 14.74
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCT027796
EnsemblENSDARG00000025899 (pnx)
Uniprot/SPTREMBLF1R2J1, F1R2J1_DANRE
ZFINZDB-GENE-030328-42 (pnx)

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