Gene: ube2b - ENSDARG00000026035 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000026035
Name	ube2b
Description	ubiquitin-conjugating enzyme E2B (RAD6 homolog) [Source:ZFIN;Acc:ZDB-GENE-040718-247]
Organism	Danio rerio (zebrafish)
Synonym(s)	zgc:100921
Orthologs(s)	7 orthologs
Paralog(s)	25 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.85e3 1.85e3	93.81 93.81	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	2.95e3 2.95e3	90.13 90.13	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	3.09e3 3.09e3	89.66 89.66	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	3.33e3 3.33e3	88.86 88.86	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	3.45e3 3.45e3 6.97e3	88.46 88.46 76.67	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	3.78e3 3.78e3 5.98e3	87.33 87.33 79.99	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	4.20e3 4.20e3	85.95 85.95	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	4.29e3 4.29e3	85.62 85.62	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage	4.62e3 4.62e3 5.77e3 6.01e3 9.12e3 9.21e3	84.52 84.52 80.70 79.86 69.46 69.16	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	5.27e3 5.27e3	82.36 82.36	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	5.82e3 5.82e3	80.51 80.51	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	6.20e3 6.20e3	79.25 79.25	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	6.71e3 6.71e3	77.53 77.53	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	7.11e3 7.11e3	76.18 76.18	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	7.32e3 7.32e3	75.50 75.50	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	7.33e3 7.33e3	75.47 75.47	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	7.58e3 7.58e3 7.88e3	74.63 74.63 73.61	AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	7.99e3 7.99e3	73.26 73.26	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	8.23e3 8.23e3	72.44 72.44	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	9.29e3 9.29e3 9.32e3	68.91 68.91 68.78	AEIR AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	9.44e3 9.44e3	68.38 68.38	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	9.81e3 9.81e3	67.15 67.15	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.09e4 1.09e4	63.42 63.42	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	1.22e4 1.22e4 1.26e4	59.07 59.07 57.93	AEIR AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 2 stages ZFS:0000040Larval:Days 14-20 UBERON:0000068embryo stage	1.45e4 1.45e4 1.50e4	51.57 51.57 49.80	AEIR AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Bilateria	7 species Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	7 genes FBgn0004436 Ubc6 WBGene00006701 ubc-1 FBgn0093102 GF16080 FBgn0145234 GI22506 FBgn0191136 GD19645 FBgn0197397 GJ10109 FBgn0242398 GE25319	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000026035.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	2 genes ENSDARG00000003017 zgc:55512 ENSDARG00000098466 ube2a	Compare expression	[+]
Eukaryota	25 genes ENSDARG00000000019 ube2h ENSDARG00000003017 zgc:55512 ENSDARG00000007438 ube2ib ENSDARG00000008748 ube2na ENSDARG00000012244 ube2e3 ENSDARG00000013505 ube2kb ENSDARG00000015057 ube2d4 ENSDARG00000015292 ube2g1a ENSDARG00000025404 ube2g2 ENSDARG00000025754 ube2f ENSDARG00000029107 ube2d1a ENSDARG00000031775 ube2s ENSDARG00000034670 ube2e2 ENSDARG00000035770 ube2c ENSDARG00000038473 ube2d3 ENSDARG00000038576 ube2d1b ENSDARG00000043484 ube2d2 ENSDARG00000045877 ube2nb ENSDARG00000052649 ube2ia ENSDARG00000063285 ube2t ENSDARG00000069527 ube2g1b ENSDARG00000089055 ube2ka ENSDARG00000098466 ube2a ENSDARG00000099749 ube2d2l ENSDARG00000101521 UBE2M	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000026035.

Cross-references

Ensembl	ENSDARG00000026035 (ube2b)
ZFIN	ZDB-GENE-040718-247 (ube2b)
EMBL	BC076409, FP017197
Uniprot/SPTREMBL	Q6DGE1, Q6DGE1_DANRE