D. rerio Gene: pdcd5 - ENSDARG00000026072 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000026072
Namepdcd5
Descriptionprogrammed cell death 5 [Source:ZFIN;Acc:ZDB-GENE-040426-980]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:56315
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
531
  • 531
  • 571
  • 1.82e3
  • 4.72e3
  • 5.08e3
98.23
  • 98.23
  • 98.09
  • 93.91
  • 84.20
  • 82.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
720
  • 720
97.59
  • 97.59
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
805
  • 805
  • 1.24e3
  • 2.45e3
  • 2.53e3
  • 2.84e3
  • 2.92e3
97.31
  • 97.31
  • 95.86
  • 91.78
  • 91.54
  • 90.48
  • 90.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
841
  • 841
97.19
  • 97.19
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
917
  • 917
  • 1.24e3
  • 1.27e3
  • 1.41e3
  • 1.71e3
  • 1.78e3
  • 1.79e3
  • 1.89e3
  • 1.90e3
  • 1.96e3
96.93
  • 96.93
  • 95.85
  • 95.76
  • 95.27
  • 94.27
  • 94.03
  • 94.02
  • 93.67
  • 93.64
  • 93.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.21e3
  • 1.21e3
95.96
  • 95.96
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.33e3
  • 1.33e3
95.54
  • 95.54
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.37e3
  • 1.37e3
95.41
  • 95.41
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
95.31
  • 95.31
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.51e3
  • 1.51e3
  • 2.42e3
94.94
  • 94.94
  • 91.89
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.53e3
  • 1.53e3
94.87
  • 94.87
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
94.72
  • 94.72
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.63e3
  • 1.63e3
  • 2.83e3
  • 1.45e4
94.54
  • 94.54
  • 90.54
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.63e3
  • 1.63e3
94.53
  • 94.53
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.68e3
  • 1.68e3
  • 2.09e3
  • 4.81e3
  • 9.57e3
94.36
  • 94.36
  • 93.01
  • 83.89
  • 67.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.78e3
  • 1.78e3
  • 2.86e3
  • 3.10e3
94.04
  • 94.04
  • 90.43
  • 89.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.00e3
  • 2.00e3
  • 2.16e3
  • 2.22e3
  • 2.25e3
  • 2.47e3
  • 2.52e3
  • 2.53e3
  • 2.59e3
  • 2.60e3
  • 2.84e3
  • 4.09e3
  • 4.18e3
  • 6.24e3
  • 7.29e3
  • 1.44e4
  • 1.49e4
  • 1.50e4
93.31
  • 93.31
  • 92.76
  • 92.57
  • 92.45
  • 91.72
  • 91.58
  • 91.54
  • 91.32
  • 91.30
  • 90.50
  • 86.32
  • 85.99
  • 79.11
  • 75.58
  • 51.82
  • 50.25
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.01e3
  • 2.01e3
93.29
  • 93.29
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.07e3
  • 2.07e3
93.07
  • 93.07
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.09e3
  • 2.09e3
  • 2.82e3
92.99
  • 92.99
  • 90.54
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.10e3
  • 2.10e3
92.99
  • 92.99
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.12e3
  • 2.12e3
92.91
  • 92.91
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.18e3
  • 2.18e3
92.70
  • 92.70
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.20e3
  • 2.20e3
92.64
  • 92.64
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.36e3
  • 2.36e3
92.10
  • 92.10
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.37e3
  • 2.37e3
92.08
  • 92.08
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.42e3
  • 2.42e3
91.89
  • 91.89
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.49e3
  • 2.49e3
91.66
  • 91.66
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.59e3
  • 2.59e3
91.34
  • 91.34
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.67e3
  • 2.67e3
91.06
  • 91.06
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.83e3
  • 2.83e3
90.53
  • 90.53
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.54e3
  • 3.54e3
  • 3.80e3
88.15
  • 88.15
  • 87.29
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.09e3
  • 4.09e3
86.31
  • 86.31
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.93e3
  • 4.93e3
83.50
  • 83.50
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.22e4
  • 1.22e4
59.12
  • 59.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species18 genesCompare expression
Bilateria24 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000026072.

Cross-references

EnsemblENSDARG00000026072 (pdcd5)
ZFINZDB-GENE-040426-980 (pdcd5)
EMBLBC046067, BC071345, CR936382
Uniprot/SPTREMBLQ7ZUZ4, Q7ZUZ4_DANRE

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