D. rerio Gene: col11a1a - ENSDARG00000026165 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000026165
Namecol11a1a
Descriptioncollagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
OrganismDanio rerio (zebrafish)
Synonym(s)col11a1, wu:fb34e11, wu:fc11b03, zgc:158335, zgc:158335gn

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
392
  • 392
  • 5.90e3
98.69
  • 98.69
  • 80.23
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
444
  • 444
  • 789
  • 893
98.52
  • 98.52
  • 97.36
  • 97.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
457
  • 457
  • 536
  • 827
  • 1.03e3
  • 1.06e3
  • 1.13e3
  • 1.60e3
  • 2.04e3
  • 4.48e3
  • 6.61e3
98.47
  • 98.47
  • 98.21
  • 97.23
  • 96.55
  • 96.44
  • 96.23
  • 94.63
  • 93.16
  • 85.00
  • 77.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
568
  • 568
  • 611
  • 705
  • 956
  • 1.59e3
  • 1.74e3
  • 1.77e3
  • 4.31e3
  • 8.90e3
  • 1.28e4
  • 1.35e4
  • 1.43e4
98.10
  • 98.10
  • 97.96
  • 97.64
  • 96.80
  • 94.69
  • 94.17
  • 94.08
  • 85.58
  • 70.20
  • 57.03
  • 54.77
  • 52.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
809
  • 809
97.29
  • 97.29
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.43e3
  • 2.43e3
  • 1.57e4
91.86
  • 91.86
  • 47.55
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.46e3
  • 2.46e3
91.76
  • 91.76
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.02e3
  • 3.02e3
  • 1.91e4
89.90
  • 89.90
  • 36.17
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.89e3
  • 3.89e3
86.99
  • 86.99
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.31e3
  • 4.31e3
85.56
  • 85.56
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 8.96e3
  • 9.71e3
  • 1.08e4
  • 1.12e4
  • 1.14e4
  • 1.15e4
  • 1.20e4
  • 1.22e4
  • 1.22e4
75.00
  • 75.00
  • 69.99
  • 67.48
  • 63.97
  • 62.48
  • 61.75
  • 61.53
  • 59.98
  • 59.06
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011242ethmoid cartilage
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0011610ceratohyal cartilage
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.83e3
  • 7.83e3
73.80
  • 73.80
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
7.91e3
  • 7.91e3
73.50
  • 73.50
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.06e3
  • 8.06e3
73.00
  • 73.00
AEIR
  • AEIR
UBERON:0004752palatoquadrate cartilage
  • ZFS:0000035Larval:Protruding-mouth
8.96e3
  • 8.96e3
70.00
  • 70.00
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
8.96e3
  • 8.96e3
  • 1.12e4
  • 1.15e4
  • 1.18e4
  • 1.28e4
69.98
  • 69.98
  • 62.48
  • 61.34
  • 60.50
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.07e4
  • 1.07e4
  • 1.12e4
  • 1.15e4
64.27
  • 64.27
  • 62.49
  • 61.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.11e4
  • 1.11e4
  • 1.17e4
  • 1.19e4
62.86
  • 62.86
  • 60.85
  • 60.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004741cleithrum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.12e4
  • 1.12e4
  • 1.22e4
62.49
  • 62.49
  • 59.08
AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
1.12e4
  • 1.12e4
  • 1.24e4
  • 1.26e4
62.48
  • 62.48
  • 58.32
  • 57.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.14e4
  • 1.14e4
  • 1.25e4
  • 1.25e4
61.88
  • 61.88
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.14e4
  • 1.14e4
  • 1.14e4
  • 1.21e4
  • 1.23e4
  • 1.27e4
  • 1.27e4
  • 1.28e4
61.75
  • 61.75
  • 61.75
  • 59.36
  • 58.80
  • 57.47
  • 57.47
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.20e4
61.75
  • 61.75
  • 59.98
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
1.18e4
  • 1.18e4
60.50
  • 60.50
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.19e4
  • 1.19e4
  • 1.43e4
  • 1.47e4
60.30
  • 60.30
  • 52.11
  • 50.79
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.11
  • 59.11
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.00
  • 58.00
AEIR
  • AEIR
UBERON:0008895splanchnocranium
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
  • 1.31e4
56.24
  • 56.24
  • 56.24
AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
1.42e4
  • 1.42e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
1.42e4
  • 1.42e4
52.47
  • 52.47
AEIR
  • AEIR
UBERON:0004124myocardium trabecular layer
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0007215trabecula cranii
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0009635parachordal cartilage
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003107Meckel's cartilage
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.86
  • 48.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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