D. rerio Gene: prpf8 - ENSDARG00000026180 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000026180
Nameprpf8
Descriptionpre-mRNA processing factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-577]
OrganismDanio rerio (zebrafish)
Synonym(s)f1r7p3, id:ibd1257, ik:tdsubc_2a9, im:7141966, tdsubc_2a9, wu:fb37c02, wu:fb73e06, xx:tdsubc_2a9, zgc:56504
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
326
  • 326
98.91
  • 98.91
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
390
  • 390
  • 418
  • 424
  • 470
  • 542
  • 579
  • 686
  • 936
  • 1.12e3
  • 1.33e3
  • 1.55e3
  • 1.94e3
  • 1.96e3
  • 2.21e3
  • 1.29e4
  • 1.41e4
  • 1.43e4
  • 1.45e4
98.70
  • 98.70
  • 98.61
  • 98.58
  • 98.43
  • 98.19
  • 98.06
  • 97.71
  • 96.87
  • 96.26
  • 95.57
  • 94.80
  • 93.49
  • 93.43
  • 92.60
  • 56.79
  • 52.87
  • 52.23
  • 51.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
406
  • 406
98.64
  • 98.64
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
429
  • 429
98.57
  • 98.57
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
519
  • 519
98.27
  • 98.27
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
557
  • 557
  • 578
  • 612
  • 642
  • 664
  • 1.21e3
98.14
  • 98.14
  • 98.07
  • 97.95
  • 97.85
  • 97.78
  • 95.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
629
  • 629
  • 703
  • 774
  • 1.18e3
  • 1.34e3
  • 1.41e3
  • 1.41e3
  • 2.11e3
  • 2.19e3
  • 2.94e3
97.90
  • 97.90
  • 97.65
  • 97.41
  • 96.04
  • 95.53
  • 95.28
  • 95.28
  • 92.93
  • 92.67
  • 90.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
813
  • 813
  • 1.14e3
  • 1.68e3
  • 2.61e3
97.28
  • 97.28
  • 96.18
  • 94.38
  • 91.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
997
  • 997
96.66
  • 96.66
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
1.07e3
  • 1.07e3
  • 1.10e3
  • 1.49e3
  • 3.14e3
  • 4.80e3
96.44
  • 96.44
  • 96.31
  • 95.02
  • 89.50
  • 83.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
1.07e3
  • 1.07e3
  • 3.80e3
  • 1.34e4
  • 1.49e4
96.41
  • 96.41
  • 87.27
  • 54.99
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.56e3
  • 1.56e3
94.79
  • 94.79
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.59e3
  • 1.59e3
  • 2.09e3
  • 3.16e3
94.69
  • 94.69
  • 93.00
  • 89.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.67e3
  • 1.67e3
  • 1.85e3
94.42
  • 94.42
  • 93.82
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.69e3
  • 1.69e3
94.36
  • 94.36
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.77e3
  • 1.77e3
94.09
  • 94.09
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.77e3
  • 1.77e3
94.07
  • 94.07
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.82e3
  • 1.82e3
93.91
  • 93.91
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
2.13e3
  • 2.13e3
  • 2.13e3
  • 2.13e3
  • 2.49e3
  • 2.49e3
  • 2.49e3
  • 2.49e3
  • 2.49e3
  • 2.49e3
  • 2.49e3
  • 2.49e3
  • 2.49e3
  • 2.49e3
  • 2.49e3
  • 2.49e3
  • 3.32e3
  • 3.45e3
  • 4.27e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 6.15e3
  • 6.15e3
  • 6.40e3
  • 6.64e3
  • 6.64e3
  • 6.64e3
  • 6.64e3
  • 6.72e3
  • 6.72e3
  • 6.97e3
92.86
  • 92.86
  • 92.86
  • 92.86
  • 91.67
  • 91.67
  • 91.67
  • 91.67
  • 91.67
  • 91.67
  • 91.67
  • 91.67
  • 91.67
  • 91.67
  • 91.67
  • 91.67
  • 88.89
  • 88.46
  • 85.71
  • 83.33
  • 83.33
  • 83.33
  • 79.40
  • 79.40
  • 78.56
  • 77.77
  • 77.77
  • 77.77
  • 77.77
  • 77.49
  • 77.49
  • 76.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.17e3
  • 2.17e3
  • 3.57e3
92.75
  • 92.75
  • 88.04
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.26e3
  • 2.26e3
92.42
  • 92.42
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.32e3
  • 2.32e3
92.23
  • 92.23
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.52e3
  • 2.52e3
91.55
  • 91.55
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
91.49
  • 91.49
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.56e3
  • 2.56e3
91.45
  • 91.45
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.56e3
  • 2.56e3
91.44
  • 91.44
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.88e3
  • 2.88e3
90.35
  • 90.35
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.75
  • 88.75
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.50e3
  • 3.50e3
88.27
  • 88.27
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.68e3
  • 3.68e3
87.69
  • 87.69
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.63e3
  • 4.63e3
84.48
  • 84.48
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.72e3
  • 5.72e3
80.84
  • 80.84
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000026180.

Cross-references

EnsemblENSDARG00000026180 (prpf8)
ZFINZDB-GENE-030131-577 (prpf8)
EMBLCR522882
Uniprot/SPTREMBLF1R7K1, F1R7K1_DANRE

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