Gene: ppm1e - ENSDARG00000026499 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000026499
Name	ppm1e
Description	protein phosphatase, Mg2+/Mn2+ dependent, 1E [Source:ZFIN;Acc:ZDB-GENE-070326-2]
Organism	Danio rerio (zebrafish)
Synonym(s)	camkp-n
Paralog(s)	1 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	3.38e3 3.38e3	88.70 88.70	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	5.67e3 5.67e3 1.26e4	81.01 81.01 57.77	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	8.02e3 8.02e3	73.14 73.14	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	8.51e3 8.51e3 9.15e3	71.50 71.50 69.38	AEIR AEIR AEIR
UBERON:0002037	cerebellum	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.17e4 1.17e4	60.70 60.70	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage	1.24e4 1.24e4 1.28e4 1.50e4 1.86e4 1.96e4	58.56 58.56 57.22 49.67 37.78 34.26	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001905	pineal body	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.26e4 1.26e4	57.87 57.87	AEIR AEIR
UBERON:0001893	telencephalon	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.33e4 1.33e4	55.53 55.53	AEIR AEIR
UBERON:0002240	spinal cord	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.34e4 1.34e4	55.24 55.24	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.43e4 1.43e4	52.05 52.05	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.45e4 1.45e4	51.29 51.29	AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.94 49.94	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.55e4 1.55e4 1.94e4	48.21 48.21 35.19	AEIR AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.56e4 1.56e4	47.62 47.62	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.60e4 1.60e4	46.58 46.58	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.64e4 1.64e4	45.11 45.11	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.76e4 1.76e4	41.14 41.14	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.87e4 1.87e4	37.41 37.41	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.88e4 1.88e4	37.11 37.11	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.91e4 1.91e4	36.15 36.15	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.10e4 2.10e4	29.77 29.77	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Metazoa	1 gene ENSDARG00000005786 ppm1f	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000026499.

Cross-references

Ensembl	ENSDARG00000026499 (ppm1e)
ZFIN	ZDB-GENE-070326-2 (ppm1e)
EMBL	AL935293, CR855192
Uniprot/SPTREMBL	F1R3T2, F1R3T2_DANRE