D. rerio Gene: hoxb6b - ENSDARG00000026513 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000026513
Namehoxb6b
Descriptionhomeobox B6b [Source:ZFIN;Acc:ZDB-GENE-000823-7]
OrganismDanio rerio (zebrafish)
Synonym(s)hoxa7, z-5

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000465material anatomical entity
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
2.61e3
  • 2.61e3
  • 3.29e3
  • 3.70e3
  • 7.89e3
  • 1.07e4
91.17479
  • 91.17479
  • 88.88551
  • 87.49494
  • 73.32320
  • 63.87031
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000025Segmentation:10-13 somites
4.93e3
  • 4.93e3
83.33503
  • 83.33503
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
6.48e3
  • 6.48e3
  • 9.32e3
  • 1.17e4
  • 1.17e4
  • 1.18e4
  • 1.20e4
  • 1.27e4
  • 1.28e4
  • 1.36e4
  • 1.39e4
  • 1.43e4
  • 1.44e4
  • 1.44e4
  • 1.46e4
78.11654
  • 78.11654
  • 68.50102
  • 60.62494
  • 60.40831
  • 60.14595
  • 59.50117
  • 57.08630
  • 56.90114
  • 54.05286
  • 53.08363
  • 51.68219
  • 51.46244
  • 51.28291
  • 50.61822
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
6.83e3
  • 6.83e3
76.91633
  • 76.91633
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
7.03e3
  • 7.03e3
  • 7.33e3
  • 8.39e3
  • 8.58e3
  • 9.37e3
  • 9.81e3
  • 1.01e4
  • 1.11e4
  • 1.12e4
  • 1.20e4
76.23674
  • 76.23674
  • 75.22519
  • 71.63257
  • 70.99465
  • 68.34367
  • 66.85218
  • 65.84152
  • 62.37575
  • 62.06834
  • 59.51667
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
9.35e3
  • 9.35e3
68.40414
  • 68.40414
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
9.62e3
  • 9.62e3
  • 1.03e4
  • 1.11e4
67.48142
  • 67.48142
  • 65.19372
  • 62.47802
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
9.83e3
  • 9.83e3
  • 1.57e4
66.77399
  • 66.77399
  • 47.05294
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.86e3
  • 9.86e3
  • 1.01e4
  • 1.01e4
  • 1.04e4
  • 1.06e4
  • 1.08e4
  • 1.11e4
  • 1.11e4
66.66328
  • 66.66328
  • 65.88711
  • 65.77088
  • 64.68900
  • 64.25529
  • 63.61269
  • 62.47802
  • 62.47802
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.00e4
  • 1.00e4
66.15297
  • 66.15297
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.00e4
  • 1.00e4
  • 1.07e4
66.09203
  • 66.09203
  • 63.76101
AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.02e4
  • 1.02e4
  • 1.02e4
  • 1.11e4
  • 1.11e4
  • 1.14e4
65.60979
  • 65.60979
  • 65.60979
  • 62.47802
  • 62.47802
  • 61.33828
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
1.03e4
  • 1.03e4
  • 1.48e4
65.22297
  • 65.22297
  • 49.98817
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.03e4
  • 1.03e4
65.13031
  • 65.13031
AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000029Pharyngula:Prim-5
1.06e4
  • 1.06e4
64.28063
  • 64.28063
AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
1.09e4
  • 1.09e4
  • 1.16e4
  • 1.17e4
  • 1.18e4
  • 1.18e4
  • 1.20e4
63.13761
  • 63.13761
  • 60.69907
  • 60.50435
  • 59.98310
  • 59.98310
  • 59.35640
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.14e4
  • 1.14e4
  • 1.57e4
  • 1.74e4
61.50052
  • 61.50052
  • 46.92410
  • 41.29630
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.24e4
  • 1.24e4
  • 1.38e4
  • 1.46e4
58.15581
  • 58.15581
  • 53.37353
  • 50.73473
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
57.59890
  • 57.59890
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000025Segmentation:10-13 somites
1.35e4
  • 1.35e4
54.51503
  • 54.51503
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000029Pharyngula:Prim-5
1.39e4
  • 1.39e4
53.10304
  • 53.10304
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.25525
  • 52.25525
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
  • 2.42e4
45.33113
  • 45.33113
  • 18.24312
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.69e4
  • 1.69e4
42.92135
  • 42.92135
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC162868, BC162890, BX001014
EnsemblENSDARG00000026513 (hoxb6b)
Uniprot/SPTREMBLB3DHS2, B3DHS2_DANRE
ZFINZDB-GENE-000823-7 (hoxb6b)

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