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D. rerio Gene: krt1-c5 - ENSDARG00000026979 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000026979
Namekrt1-c5
Descriptionkeratin, type 1, gene c5 [Source:ZFIN;Acc:ZDB-GENE-060316-3]
OrganismDanio rerio (zebrafish)
Synonym(s)krtt1c5, si:ch211-236k19.3, zgc:153753
Orthologs(s)1 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
6.08e3
  • 6.08e3
  • 1.06e4
  • 1.25e4
  • 1.40e4
  • 1.51e4
79.63
  • 79.63
  • 64.40
  • 58.08
  • 53.20
  • 49.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
6.77e3
  • 6.77e3
  • 9.93e3
77.34
  • 77.34
  • 66.74
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
  • 1.96e4
66.39
  • 66.39
  • 34.49
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.18e4
  • 1.18e4
60.58
  • 60.58
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.47
  • 59.47
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
57.15
  • 57.15
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.30e4
  • 1.30e4
56.50
  • 56.50
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.00
  • 54.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.85
  • 50.85
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.86
  • 42.86
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.49
  • 34.49
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.55
  • 31.55
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.59
  • 29.59
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000026979.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000026979.

Cross-references

EnsemblENSDARG00000026979 (krt1-c5)
ZFINZDB-GENE-060316-3 (krt1-c5)
EMBLBX255921
Uniprot/SPTREMBLA2BF93, A2BF93_DANRE, F1QR21, F1QR21_DANRE

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