D. rerio Gene: gbf1 - ENSDARG00000027016 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000027016
Namegbf1
Descriptiongolgi brefeldin A resistant guanine nucleotide exchange factor 1 [Source:ZFIN;Acc:ZDB-GENE-081107-54]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-183c23.1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
3.05e3
  • 3.05e3
  • 5.01e3
  • 7.55e3
  • 8.38e3
89.80
  • 89.80
  • 83.24
  • 74.71
  • 71.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.78e3
  • 3.78e3
87.34
  • 87.34
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0004707pharyngula stage
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
4.22e3
  • 4.22e3
  • 6.64e3
  • 7.11e3
  • 7.84e3
  • 7.98e3
  • 8.10e3
  • 8.31e3
  • 8.31e3
  • 9.44e3
  • 9.57e3
  • 1.03e4
  • 1.09e4
  • 1.10e4
  • 1.12e4
  • 1.14e4
  • 1.20e4
  • 1.22e4
  • 1.22e4
  • 1.22e4
  • 1.23e4
  • 1.24e4
  • 1.24e4
  • 1.29e4
  • 1.29e4
85.89
  • 85.89
  • 77.76
  • 76.21
  • 73.75
  • 73.27
  • 72.87
  • 72.18
  • 72.17
  • 68.38
  • 67.94
  • 65.61
  • 63.59
  • 63.32
  • 62.46
  • 61.75
  • 59.77
  • 59.08
  • 59.08
  • 59.08
  • 58.89
  • 58.32
  • 58.32
  • 56.65
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
84.25
  • 84.25
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.78e3
  • 5.78e3
  • 7.83e3
80.66
  • 80.66
  • 73.78
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.32e3
  • 6.32e3
78.84
  • 78.84
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.03e3
  • 7.03e3
76.48
  • 76.48
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
7.13e3
  • 7.13e3
  • 7.56e3
  • 8.50e3
  • 8.66e3
  • 9.10e3
  • 9.29e3
  • 9.70e3
  • 1.05e4
  • 1.15e4
  • 1.28e4
76.14
  • 76.14
  • 74.70
  • 71.54
  • 70.99
  • 69.52
  • 68.88
  • 67.52
  • 64.99
  • 61.62
  • 57.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.74e3
  • 7.74e3
74.09
  • 74.09
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.76e3
  • 7.76e3
74.01
  • 74.01
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
7.88e3
  • 7.88e3
  • 7.90e3
  • 8.04e3
  • 8.21e3
  • 9.26e3
73.60
  • 73.60
  • 73.54
  • 73.07
  • 72.51
  • 68.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.90e3
  • 7.90e3
73.55
  • 73.55
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.14e3
  • 8.14e3
72.73
  • 72.73
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
8.62e3
  • 8.62e3
  • 1.10e4
71.14
  • 71.14
  • 63.00
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
8.85e3
  • 8.85e3
  • 1.02e4
  • 1.10e4
  • 1.11e4
  • 1.15e4
  • 1.15e4
70.37
  • 70.37
  • 66.00
  • 63.28
  • 62.73
  • 61.62
  • 61.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.94e3
  • 8.94e3
70.05
  • 70.05
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.98e3
  • 8.98e3
69.94
  • 69.94
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
9.02e3
  • 9.02e3
  • 9.56e3
  • 1.16e4
69.79
  • 69.79
  • 67.98
  • 61.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.22e3
  • 9.22e3
69.13
  • 69.13
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.34e3
  • 9.34e3
68.72
  • 68.72
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.45e3
  • 9.45e3
68.37
  • 68.37
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.52e3
  • 9.52e3
68.11
  • 68.11
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.57e3
  • 9.57e3
67.96
  • 67.96
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.75e3
  • 9.75e3
  • 1.07e4
67.37
  • 67.37
  • 64.09
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.78e3
  • 9.78e3
67.26
  • 67.26
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.83e3
  • 9.83e3
67.08
  • 67.08
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.11
  • 65.11
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.71
  • 64.71
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.61
  • 64.61
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.41
  • 60.41
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000027016 (gbf1)
ZFINZDB-GENE-081107-54 (gbf1)

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