D. rerio Gene: scyl3 - ENSDARG00000027046 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000027046
Namescyl3
DescriptionSCY1-like, kinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-030131-2559]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:faa95c04, wu:fc11d06, zgc:55575
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
231
  • 231
99.23
  • 99.23
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
685
  • 685
  • 6.83e3
  • 7.01e3
  • 7.03e3
  • 7.14e3
  • 7.16e3
  • 7.29e3
  • 7.79e3
  • 7.93e3
  • 7.99e3
  • 8.28e3
  • 8.76e3
  • 8.90e3
  • 8.92e3
97.71
  • 97.71
  • 77.14
  • 76.53
  • 76.45
  • 76.10
  • 76.02
  • 75.59
  • 73.93
  • 73.45
  • 73.24
  • 72.28
  • 70.68
  • 70.21
  • 70.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
810
  • 810
  • 858
  • 862
  • 2.08e3
  • 2.57e3
97.29
  • 97.29
  • 97.13
  • 97.12
  • 93.02
  • 91.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.25e3
  • 1.25e3
95.82
  • 95.82
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.83e3
  • 1.83e3
93.87
  • 93.87
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.70e3
  • 2.70e3
90.97
  • 90.97
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.87e3
  • 2.87e3
90.40
  • 90.40
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.58e3
  • 3.58e3
88.02
  • 88.02
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.73e3
  • 3.73e3
87.51
  • 87.51
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.39e3
  • 4.39e3
85.30
  • 85.30
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.41e3
  • 4.41e3
  • 6.96e3
85.23
  • 85.23
  • 76.71
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.85e3
  • 4.85e3
83.76
  • 83.76
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.88e3
  • 4.88e3
83.65
  • 83.65
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.90e3
  • 4.90e3
83.60
  • 83.60
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
5.03e3
  • 5.03e3
  • 8.50e3
  • 9.65e3
  • 1.11e4
83.16
  • 83.16
  • 71.53
  • 67.70
  • 62.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.35e3
  • 5.35e3
82.08
  • 82.08
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
5.92e3
  • 5.92e3
  • 6.56e3
  • 6.79e3
  • 7.24e3
  • 7.28e3
  • 7.40e3
80.19
  • 80.19
  • 78.02
  • 77.26
  • 75.75
  • 75.61
  • 75.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.14e3
  • 6.14e3
79.45
  • 79.45
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.37e3
  • 6.37e3
78.69
  • 78.69
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.45e3
  • 6.45e3
78.40
  • 78.40
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.50e3
  • 6.50e3
78.25
  • 78.25
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
7.16e3
  • 7.16e3
  • 7.64e3
76.04
  • 76.04
  • 74.42
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.42e3
  • 7.42e3
  • 9.13e3
75.17
  • 75.17
  • 69.43
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.42e3
  • 7.42e3
  • 7.68e3
  • 9.11e3
75.16
  • 75.16
  • 74.28
  • 69.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
7.70e3
  • 7.70e3
  • 8.17e3
  • 8.23e3
  • 8.36e3
  • 8.44e3
  • 8.74e3
  • 8.76e3
  • 9.30e3
  • 9.88e3
  • 1.04e4
74.22
  • 74.22
  • 72.66
  • 72.44
  • 72.01
  • 71.75
  • 70.75
  • 70.67
  • 68.87
  • 66.94
  • 65.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.77e3
  • 7.77e3
  • 8.49e3
73.97
  • 73.97
  • 71.58
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.78e3
  • 7.78e3
73.95
  • 73.95
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.93e3
  • 7.93e3
73.47
  • 73.47
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000014Blastula:Sphere
8.04e3
  • 8.04e3
  • 8.30e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.96e3
  • 9.25e3
  • 9.67e3
  • 9.67e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
  • 1.07e4
  • 1.10e4
  • 1.16e4
73.07
  • 73.07
  • 72.22
  • 71.43
  • 71.43
  • 71.43
  • 69.99
  • 69.03
  • 67.63
  • 67.63
  • 67.48
  • 66.66
  • 66.66
  • 66.66
  • 66.66
  • 66.66
  • 66.66
  • 66.66
  • 66.66
  • 66.66
  • 66.66
  • 66.66
  • 66.66
  • 66.66
  • 66.65
  • 66.65
  • 66.65
  • 66.65
  • 64.98
  • 64.28
  • 63.32
  • 61.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.34e3
  • 8.34e3
72.08
  • 72.08
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.39e3
  • 8.39e3
71.90
  • 71.90
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.47e3
  • 8.47e3
71.63
  • 71.63
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.53e3
  • 8.53e3
71.44
  • 71.44
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.71e3
  • 8.71e3
70.83
  • 70.83
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000027046 (scyl3)
ZFINZDB-GENE-030131-2559 (scyl3)
EMBLBX323056
Uniprot/SPTREMBLQ5RI03, Q5RI03_DANRE, U3JAC5, U3JAC5_DANRE

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