D. rerio Gene: arpc1b - ENSDARG00000027063 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000027063
Namearpc1b
Descriptionactin related protein 2/3 complex, subunit 1B [Source:ZFIN;Acc:ZDB-GENE-030131-7414]
OrganismDanio rerio (zebrafish)
Synonym(s)arpc1a, cb871, fj15h02, wu:fj08e12, wu:fj15h02, zgc:64056
Orthologs(s)24 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
137
  • 137
99.54
  • 99.54
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
306
  • 306
98.98
  • 98.98
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
308
  • 308
98.97
  • 98.97
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
544
  • 544
98.18
  • 98.18
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
913
  • 913
96.95
  • 96.95
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
948
  • 948
96.83
  • 96.83
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.01e3
  • 1.01e3
96.61
  • 96.61
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.18e3
  • 1.18e3
96.04
  • 96.04
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.87e3
  • 1.87e3
  • 9.87e3
93.75
  • 93.75
  • 66.96
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.16e3
  • 2.16e3
92.78
  • 92.78
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.42e3
  • 2.42e3
  • 2.82e3
91.90
  • 91.90
  • 90.57
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.55e3
  • 2.55e3
  • 4.96e3
91.46
  • 91.46
  • 83.38
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
2.80e3
  • 2.80e3
  • 6.05e3
  • 6.13e3
  • 6.57e3
  • 8.63e3
  • 1.12e4
  • 1.27e4
  • 1.43e4
90.62
  • 90.62
  • 79.76
  • 79.48
  • 78.01
  • 71.09
  • 62.59
  • 57.59
  • 52.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.37e3
  • 3.37e3
  • 8.53e3
88.73
  • 88.73
  • 71.45
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.73e3
  • 3.73e3
87.51
  • 87.51
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.87e3
  • 3.87e3
87.04
  • 87.04
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
4.71e3
  • 4.71e3
  • 4.73e3
  • 6.74e3
84.22
  • 84.22
  • 84.18
  • 77.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
5.17e3
  • 5.17e3
  • 5.79e3
  • 6.51e3
  • 6.55e3
  • 6.63e3
  • 8.03e3
  • 9.89e3
  • 1.53e4
82.68
  • 82.68
  • 80.60
  • 78.21
  • 78.08
  • 77.80
  • 73.11
  • 66.90
  • 48.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.23e3
  • 5.23e3
82.49
  • 82.49
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.90e3
  • 5.90e3
80.26
  • 80.26
AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
6.22e3
  • 6.22e3
  • 7.47e3
  • 8.53e3
  • 8.54e3
  • 8.54e3
  • 9.33e3
  • 9.34e3
79.16
  • 79.16
  • 74.99
  • 71.43
  • 71.42
  • 71.42
  • 68.74
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.40e3
  • 8.40e3
  • 8.40e3
  • 1.02e4
  • 1.02e4
71.86
  • 71.86
  • 71.86
  • 65.77
  • 65.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.68e3
  • 8.68e3
70.94
  • 70.94
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.44e3
  • 9.44e3
  • 9.44e3
  • 1.14e4
  • 1.14e4
68.40
  • 68.40
  • 68.40
  • 61.75
  • 61.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.74e3
  • 9.74e3
67.40
  • 67.40
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
1.20e4
  • 1.20e4
  • 1.25e4
59.98
  • 59.98
  • 58.31
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.32e4
  • 1.32e4
55.83
  • 55.83
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.49e4
  • 1.49e4
  • 1.52e4
49.95
  • 49.95
  • 49.08
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.50e4
  • 1.50e4
49.77
  • 49.77
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
1.58e4
  • 1.58e4
  • 1.75e4
46.98
  • 46.98
  • 41.42
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000027063.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Deuterostomia2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000027063.

Cross-references

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