D. rerio Gene: hmbox1a - ENSDARG00000027082 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000027082
Namehmbox1a
Descriptionhomeobox containing 1a [Source:ZFIN;Acc:ZDB-GENE-050913-89]
OrganismDanio rerio (zebrafish)
Synonym(s)hmbox1, zgc:114064

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
3.65e3
  • 3.65e3
  • 4.37e3
87.78
  • 87.78
  • 85.38
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
6.22e3
  • 6.22e3
  • 1.63e4
79.16
  • 79.16
  • 45.47
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.49e3
  • 6.49e3
78.28
  • 78.28
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
7.99e3
  • 7.99e3
73.25
  • 73.25
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
8.85e3
  • 8.85e3
  • 2.00e4
  • 2.22e4
  • 2.23e4
  • 2.23e4
70.37
  • 70.37
  • 32.88
  • 25.55
  • 25.31
  • 25.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.98e3
  • 9.98e3
66.57
  • 66.57
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.53
  • 52.53
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
  • 2.00e4
51.69
  • 51.69
  • 33.08
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.44
  • 46.44
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.57
  • 42.57
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.16
  • 42.16
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.33
  • 40.33
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.20
  • 40.20
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
39.95
  • 39.95
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.43
  • 39.43
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.94e4
  • 1.94e4
  • 1.96e4
34.96
  • 34.96
  • 34.52
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.46
  • 33.46
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.55
  • 32.55
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
30.04
  • 30.04
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
27.24
  • 27.24
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBX005004
EnsemblENSDARG00000027082 (hmbox1a)
Uniprot/SPTREMBLF1RBW1, F1RBW1_DANRE
ZFINZDB-GENE-050913-89 (hmbox1a)

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