D. rerio Gene: ube2l3b - ENSDARG00000027141 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000027141
Nameube2l3b
Descriptionubiquitin-conjugating enzyme E2L 3b [Source:ZFIN;Acc:ZDB-GENE-030131-662]
OrganismDanio rerio (zebrafish)
Synonym(s)ube2l3, ube2l3l, wu:fb38h03

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
430
  • 430
  • 474
  • 3.44e3
  • 6.69e3
  • 7.18e3
98.56
  • 98.56
  • 98.42
  • 88.48
  • 77.61
  • 75.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
484
  • 484
  • 1.33e3
  • 2.98e3
  • 3.23e3
  • 3.96e3
  • 4.24e3
98.38
  • 98.38
  • 95.57
  • 90.02
  • 89.17
  • 86.75
  • 85.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
615
  • 615
97.94
  • 97.94
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
697
  • 697
97.67
  • 97.67
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
714
  • 714
97.61
  • 97.61
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
721
  • 721
  • 1.28e3
97.59
  • 97.59
  • 95.73
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
740
  • 740
97.52
  • 97.52
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
746
  • 746
  • 1.24e3
  • 1.21e4
97.50
  • 97.50
  • 95.86
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
786
  • 786
97.37
  • 97.37
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
826
  • 826
  • 911
  • 1.29e3
  • 1.31e3
  • 1.37e3
  • 2.49e3
  • 4.06e3
  • 4.68e3
  • 4.88e3
  • 5.58e3
97.24
  • 97.24
  • 96.95
  • 95.67
  • 95.60
  • 95.43
  • 91.65
  • 86.40
  • 84.33
  • 83.66
  • 81.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
968
  • 968
96.76
  • 96.76
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
994
  • 994
96.67
  • 96.67
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.03e3
  • 1.03e3
96.55
  • 96.55
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
1.15e3
  • 1.15e3
  • 4.14e3
  • 1.45e4
96.15
  • 96.15
  • 86.13
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.17e3
  • 1.17e3
  • 1.50e4
96.10
  • 96.10
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.17e3
  • 1.17e3
96.08
  • 96.08
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.25e3
  • 1.25e3
95.80
  • 95.80
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
95.63
  • 95.63
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.42e3
  • 1.42e3
95.24
  • 95.24
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.52e3
  • 1.52e3
  • 2.79e3
94.92
  • 94.92
  • 90.67
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.66e3
  • 1.66e3
  • 3.67e3
  • 3.77e3
  • 3.93e3
  • 4.06e3
  • 4.08e3
  • 4.34e3
  • 4.35e3
  • 4.53e3
  • 4.60e3
  • 4.94e3
  • 5.23e3
  • 5.28e3
  • 5.35e3
  • 5.83e3
  • 1.04e4
  • 1.26e4
  • 1.41e4
94.45
  • 94.45
  • 87.72
  • 87.37
  • 86.85
  • 86.41
  • 86.33
  • 85.48
  • 85.42
  • 84.83
  • 84.59
  • 83.48
  • 82.49
  • 82.31
  • 82.07
  • 80.49
  • 65.18
  • 57.67
  • 52.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.74e3
  • 1.74e3
94.16
  • 94.16
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
1.93e3
  • 1.93e3
  • 2.35e3
  • 2.37e3
  • 2.78e3
93.52
  • 93.52
  • 92.13
  • 92.05
  • 90.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.25e3
  • 2.25e3
92.48
  • 92.48
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.35e3
  • 2.35e3
  • 1.50e4
92.13
  • 92.13
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.49e3
  • 2.49e3
91.66
  • 91.66
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
2.82e3
  • 2.82e3
  • 2.85e3
  • 4.36e3
90.57
  • 90.57
  • 90.45
  • 85.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.16e3
  • 3.16e3
89.43
  • 89.43
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000037Larval:Day 5
3.32e3
  • 3.32e3
  • 4.98e3
  • 4.98e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.72e3
  • 6.89e3
  • 6.97e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.96e3
  • 1.49e4
88.89
  • 88.89
  • 83.33
  • 83.33
  • 78.57
  • 78.57
  • 78.57
  • 78.56
  • 77.49
  • 76.92
  • 76.66
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 70.82
  • 70.57
  • 70.57
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 69.43
  • 66.66
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.65e3
  • 3.65e3
87.79
  • 87.79
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.71e3
  • 3.71e3
87.57
  • 87.57
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.00e3
  • 4.00e3
86.60
  • 86.60
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.08e3
  • 4.08e3
86.34
  • 86.34
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
  • 1.46e4
57.14
  • 57.14
  • 51.26
AEIR
  • AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
56.16
  • 56.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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