D. rerio Gene: rs1a - ENSDARG00000027236 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000027236
Namers1a
Descriptionretinoschisin 1a [Source:ZFIN;Acc:ZDB-GENE-040801-171]
OrganismDanio rerio (zebrafish)
Synonym(s)rs1, rs1 {eco:0000313|embl:aah76183.1,gn eco:0000313|zfin:zdb-gene-040801-171}, zgc:92703

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
139
  • 139
  • 1.02e4
  • 1.20e4
  • 1.43e4
99.54
  • 99.54
  • 65.89
  • 59.98
  • 52.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
355
  • 355
  • 2.27e3
98.81
  • 98.81
  • 92.40
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.03e3
  • 1.03e3
  • 1.77e4
96.54
  • 96.54
  • 40.57
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.08e3
  • 1.08e3
  • 4.07e3
  • 1.99e4
  • 2.28e4
  • 2.28e4
96.39
  • 96.39
  • 86.36
  • 33.48
  • 23.56
  • 23.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
  • 1.46e4
94.73
  • 94.73
  • 51.26
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.98e3
  • 5.98e3
  • 6.22e3
  • 9.13e3
79.99
  • 79.99
  • 79.16
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.39e3
  • 8.39e3
71.91
  • 71.91
AEIR
  • AEIR
UBERON:0001789outer nuclear layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 1.28e4
66.66
  • 66.66
  • 57.14
AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.10e4
  • 1.10e4
  • 1.20e4
  • 1.21e4
  • 1.25e4
63.14
  • 63.14
  • 59.98
  • 59.36
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.16e4
  • 1.16e4
  • 1.21e4
  • 1.26e4
  • 1.26e4
61.09
  • 61.09
  • 59.36
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000037Larval:Day 5
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.36e4
  • 1.36e4
  • 1.49e4
54.53
  • 54.53
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.73
  • 51.73
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.65e4
  • 2.65e4
11.43
  • 11.43
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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