D. rerio Gene: si:ch211-106h11.3 - ENSDARG00000027360 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000027360
Namesi:ch211-106h11.3
Descriptionsi:ch211-106h11.3 [Source:ZFIN;Acc:ZDB-GENE-050208-296]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7147687
Orthologs(s)1 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.15e3
  • 3.15e3
89.47
  • 89.47
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.28e3
  • 6.28e3
78.98
  • 78.98
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.48
  • 58.48
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
  • 1.85e4
57.20
  • 57.20
  • 38.00
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.91
  • 56.91
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.44e4
  • 1.44e4
  • 1.67e4
51.93
  • 51.93
  • 44.01
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
46.96
  • 46.96
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.59e4
  • 1.59e4
46.59
  • 46.59
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.74e4
  • 1.74e4
41.90
  • 41.90
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
1.74e4
  • 1.74e4
  • 1.77e4
  • 1.81e4
  • 1.86e4
  • 1.92e4
41.77
  • 41.77
  • 40.89
  • 39.25
  • 37.58
  • 35.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.77e4
  • 1.77e4
40.78
  • 40.78
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.03
  • 35.03
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.92
  • 31.92
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
30.00
  • 30.00
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
28.95
  • 28.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000027360.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Bilateria3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000027360.

Cross-references

EnsemblENSDARG00000027360 (si:ch211-106h11.3)
ZFINZDB-GENE-050208-296 (si:ch211-106h11.3)
EMBLFP016234
Uniprot/SPTREMBLF1Q5N9, F1Q5N9_DANRE, F1Q6F6, F1Q6F6_DANRE

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