D. rerio Gene: CCDC171 (1 to many) - ENSDARG00000027381 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000027381
NameCCDC171 (1 to many)
Descriptionsi:ch211-116m6.4 [Source:ZFIN;Acc:ZDB-GENE-110411-270]
OrganismDanio rerio (zebrafish)
Synonym(s)ba536d16.1, ba778p13.1, c9orf93, em:al513423.1, flj39267, flj46740

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.28e3
  • 8.28e3
72.26
  • 72.26
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.23e4
  • 1.23e4
58.74
  • 58.74
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
1.39e4
  • 1.39e4
  • 1.60e4
  • 1.72e4
53.33
  • 53.33
  • 46.45
  • 42.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.40e4
  • 1.40e4
53.22
  • 53.22
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.46e4
  • 1.46e4
51.04
  • 51.04
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.48e4
  • 1.48e4
50.31
  • 50.31
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.46
  • 44.46
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
  • 2.02e4
43.47
  • 43.47
  • 32.21
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.42
  • 43.42
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
1.96e4
  • 1.96e4
34.38
  • 34.38
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.15
  • 28.15
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.21e4
  • 2.21e4
25.87
  • 25.87
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.66
  • 25.66
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.30e4
  • 2.30e4
23.14
  • 23.14
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLCU905501
EnsemblENSDARG00000027381 (CCDC171 (1 to many))
HGNCHGNC:29828 (CCDC171 (1 to many))
Uniprot/SPTREMBLF1QM09, F1QM09_DANRE, F1R252, F1R252_DANRE, F8W510, F8W510_DANRE
ZFINZDB-GENE-110411-270 (si:ch211-116m6.4)

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