D. rerio Gene: trpc7a - ENSDARG00000027523 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000027523
Nametrpc7a
Descriptiontransient receptor potential cation channel, subfamily C, member 7a [Source:ZFIN;Acc:ZDB-GENE-091113-40]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-106m10.4

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.29e4
  • 1.29e4
  • 1.34e4
56.65
  • 56.65
  • 54.99
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.48
  • 55.48
AEIR
  • AEIR
CL:0000207olfactory receptor cell
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.81e4
  • 1.81e4
39.41
  • 39.41
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.53
  • 33.53
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.22
  • 29.22
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
2.23e4
  • 2.23e4
  • 2.33e4
25.18
  • 25.18
  • 21.86
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX465186
EnsemblENSDARG00000027523 (trpc7a)
Uniprot/SPTREMBLE9QGJ3, E9QGJ3_DANRE
ZFINZDB-GENE-091113-40 (trpc7a)

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