Gene: trpc7a - ENSDARG00000027523 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000027523
Name	trpc7a
Description	transient receptor potential cation channel, subfamily C, member 7a [Source:ZFIN;Acc:ZDB-GENE-091113-40]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:dkey-106m10.4
Orthologs(s)	16 orthologs
Paralog(s)	9 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0001891	midbrain	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth	1.29e4 1.29e4 1.34e4	56.65 56.65 54.99	AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	1.33e4 1.33e4	55.48 55.48	AEIR AEIR
CL:0000207	olfactory receptor cell	[+] 4 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth ZFS:0000037Larval:Day 5	1.49e4 1.49e4 1.49e4 1.49e4 1.49e4	50.00 50.00 50.00 50.00 50.00	AEIR AEIR AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000011Blastula:1k-cell	1.81e4 1.81e4	39.41 39.41	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.99e4 1.99e4	33.53 33.53	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	2.11e4 2.11e4	29.22 29.22	AEIR AEIR
UBERON:0000922	embryo	[+] 2 stages UBERON:0000068embryo stage UBERON:0004707pharyngula stage	2.23e4 2.23e4 2.33e4	25.18 25.18 21.86	AEIR AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	16 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Gallus gallus (chicken) Anolis carolinensis (green anole)	16 genes ENSG00000069018 TRPC7 ENSMUSG00000021541 Trpc7 ENSPTRG00000017267 TRPC7 ENSGGOG00000015741 TRPC7 ENSMMUG00000000342 TRPC7 ENSRNOG00000012727 Trpc7 ENSBTAG00000014638 TRPC7 ENSSSCG00000014318 TRPC7 ENSECAG00000007659 TRPC7 ENSOCUG00000004943 TRPC7 ENSCAFG00000001103 TRPC7 ENSFCAG00000013246 TRPC7 ENSCPOG00000004430 TRPC7 ENSEEUG00000001692 TRPC7 ENSGALG00000006297 TRPC7 ENSACAG00000000336 TRPC7	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000027523.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Clupeocephala	1 gene ENSDARG00000079469 TRPC7 (1 to many)	Compare expression	[+]
Chordata	9 genes ENSDARG00000056625 trpc6a ENSDARG00000060837 trpc5b ENSDARG00000061203 trpc1 ENSDARG00000067730 trpc6b ENSDARG00000070504 trpc5a ENSDARG00000070507 trpc4a ENSDARG00000079469 TRPC7 (1 to many) ENSDARG00000098291 trpc3 ENSDARG00000102017 trpc4b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000027523.

Cross-references

Ensembl	ENSDARG00000027523 (trpc7a)
ZFIN	ZDB-GENE-091113-40 (trpc7a)
EMBL	BX465186
Uniprot/SPTREMBL	E9QGJ3, E9QGJ3_DANRE