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D. rerio Gene: tmtops2b - ENSDARG00000027822 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000027822
Nametmtops2b
Descriptionteleost multiple tissue opsin 2b [Source:ZFIN;Acc:ZDB-GENE-110411-43]
OrganismDanio rerio (zebrafish)
Synonym(s)opn3l, si:ch211-259i2.2, tmt1b
Orthologs(s)2 orthologs
Paralog(s)11 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
  • 2.33e4
52.20
  • 52.20
  • 22.14
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.77e4
  • 1.77e4
40.82
  • 40.82
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.75
  • 40.75
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
1.95e4
  • 1.95e4
  • 2.17e4
  • 2.19e4
  • 2.20e4
34.59
  • 34.59
  • 27.36
  • 26.58
  • 26.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.11e4
  • 2.11e4
  • 2.21e4
29.20
  • 29.20
  • 25.89
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
29.10
  • 29.10
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000027822.

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000027822.

Cross-references

EnsemblENSDARG00000027822 (tmtops2b)
ZFINZDB-GENE-110411-43 (tmtops2b), ZDB-GENE-130129-3 (tmtops2a)
EMBLCR450794
Uniprot/SPTREMBLE7F8D2, E7F8D2_DANRE, F1R361, F1R361_DANRE

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