D. rerio Gene: rdh8a - ENSDARG00000028048 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000028048
Namerdh8a
Descriptionretinol dehydrogenase 8a [Source:ZFIN;Acc:ZDB-GENE-021115-3]
OrganismDanio rerio (zebrafish)
Synonym(s)cb501, rdh8, rdh8 {eco:0000313|embl:aai55748.1,gn eco:0000313|zfin:zdb-gene-021115-3}, zf 1.1, zf1.1, zfprrdh2, zgc:73081
Orthologs(s)16 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001003skin epidermis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.76e3
  • 1.76e3
  • 2.64e3
94.12
  • 94.12
  • 91.17
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.06e3
  • 2.06e3
  • 4.05e3
93.10
  • 93.10
  • 86.46
AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
2.13e3
  • 2.13e3
  • 2.49e3
92.86
  • 92.86
  • 91.67
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
2.39e3
  • 2.39e3
  • 2.72e3
  • 2.99e3
  • 1.50e4
92.01
  • 92.01
  • 90.91
  • 90.00
  • 49.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
2.99e3
  • 2.99e3
  • 3.15e3
  • 9.96e3
  • 1.03e4
  • 1.07e4
  • 1.21e4
  • 1.25e4
90.00
  • 90.00
  • 89.47
  • 66.65
  • 65.61
  • 64.26
  • 59.36
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.15e3
  • 3.15e3
  • 3.74e3
89.47
  • 89.47
  • 87.49
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.30e3
  • 3.30e3
  • 8.99e3
88.96
  • 88.96
  • 69.90
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
4.02e3
  • 4.02e3
  • 7.39e3
  • 8.53e3
  • 9.26e3
  • 1.20e4
86.55
  • 86.55
  • 75.27
  • 71.43
  • 69.00
  • 59.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.15e3
  • 4.15e3
86.10
  • 86.10
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
5.33e3
  • 5.33e3
  • 1.44e4
82.16
  • 82.16
  • 51.70
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.58e3
  • 5.58e3
  • 1.49e4
81.32
  • 81.32
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.17e3
  • 6.17e3
79.36
  • 79.36
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.53e3
  • 7.53e3
  • 9.75e3
74.80
  • 74.80
  • 67.36
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.26e3
  • 8.26e3
72.36
  • 72.36
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.35e3
  • 8.35e3
72.04
  • 72.04
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.96e3
  • 8.96e3
  • 1.04e4
  • 1.12e4
  • 1.12e4
69.98
  • 69.98
  • 65.19
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
9.44e3
  • 9.44e3
68.40
  • 68.40
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
9.56e3
  • 9.56e3
67.98
  • 67.98
AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
66.65
  • 66.65
  • 66.65
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.37
  • 66.37
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.08
  • 66.08
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.02e4
  • 1.02e4
  • 1.06e4
  • 1.06e4
65.89
  • 65.89
  • 64.56
  • 64.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.07e4
  • 1.07e4
  • 1.12e4
  • 1.12e4
64.26
  • 64.26
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.43
  • 63.43
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.08
  • 63.08
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.85
  • 60.85
AEIR
  • AEIR
UBERON:2000004anterior axial hypoblast
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
1.17e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.20e4
60.70
  • 60.70
  • 60.70
  • 60.70
  • 60.70
  • 60.70
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.89
  • 59.89
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.09
  • 59.09
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.27e4
  • 1.27e4
57.60
  • 57.60
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.15
  • 56.15
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.42e4
  • 1.42e4
  • 1.46e4
52.57
  • 52.57
  • 51.22
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.70
  • 50.70
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.49e4
  • 1.49e4
  • 1.62e4
50.16
  • 50.16
  • 45.88
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.88
  • 49.88
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.09
  • 43.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression
Eumetazoa3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000028048.

Cross-references

EnsemblENSDARG00000028048 (rdh8a)
ZFINZDB-GENE-021115-3 (rdh8a)
EMBLAY306007, BC155747, BX004869, CR450742
Uniprot/SPTREMBLQ7T2I8, Q7T2I8_DANRE

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