D. rerio Gene: bmp1a - ENSDARG00000028071 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000028071
Namebmp1a
Descriptionbone morphogenetic protein 1a [Source:ZFIN;Acc:ZDB-GENE-060818-1]
OrganismDanio rerio (zebrafish)
Synonym(s)frf, frilly fins, unm t31169, unm_t31169, wdd
Orthologs(s)28 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.44e3
  • 1.44e3
95.19
  • 95.19
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.28e3
  • 2.28e3
92.38
  • 92.38
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
3.10e3
  • 3.10e3
  • 4.48e3
  • 4.52e3
  • 5.98e3
  • 6.27e3
89.62
  • 89.62
  • 85.00
  • 84.87
  • 79.99
  • 78.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.57e3
  • 3.57e3
  • 7.00e3
88.04
  • 88.04
  • 76.55
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
3.74e3
  • 3.74e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.07e3
  • 4.98e3
  • 5.27e3
  • 5.81e3
  • 6.15e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 6.97e3
  • 6.97e3
  • 7.47e3
  • 1.10e4
  • 1.50e4
87.49
  • 87.49
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 86.36
  • 83.33
  • 82.35
  • 80.55
  • 79.40
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.66
  • 76.66
  • 74.99
  • 63.17
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
86.97
  • 86.97
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
4.07e3
  • 4.07e3
  • 4.81e3
86.38
  • 86.38
  • 83.88
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.68e3
  • 4.68e3
84.32
  • 84.32
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.78e3
  • 4.78e3
  • 5.38e3
84.01
  • 84.01
  • 81.98
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.83e3
  • 4.83e3
83.83
  • 83.83
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
5.18e3
  • 5.18e3
  • 6.36e3
82.66
  • 82.66
  • 78.72
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.96e3
  • 6.96e3
  • 8.95e3
76.68
  • 76.68
  • 70.03
AEIR
  • AEIR
  • AEIR
UBERON:2000912mesenchyme median fin fold
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.20e3
  • 8.20e3
72.54
  • 72.54
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.59e3
  • 8.59e3
71.24
  • 71.24
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.74e3
  • 8.74e3
70.73
  • 70.73
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.24e3
  • 9.24e3
69.07
  • 69.07
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.09
  • 66.09
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.08
  • 66.08
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.29
  • 64.29
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.90
  • 63.90
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.66
  • 60.66
AEIR
  • AEIR
UBERON:0009848zona limitans intrathalamica
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000026Segmentation:14-19 somites
1.24e4
  • 1.24e4
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.15
  • 58.15
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
  • 1.34e4
  • 1.38e4
57.14
  • 57.14
  • 55.24
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.31e4
  • 1.31e4
  • 1.33e4
56.22
  • 56.22
  • 55.53
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.78
  • 55.78
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.37e4
  • 1.37e4
  • 1.39e4
54.13
  • 54.13
  • 53.41
AEIR
  • AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000021Gastrula:90%-epiboly
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000029Pharyngula:Prim-5
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
CL:0000062osteoblast
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000555opercular flap
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.36
  • 47.36
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species15 genesCompare expression
Bilateria22 species28 genesCompare expression

Orthology information comes from OMA : ENSDARG00000028071.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000028071.

Cross-references

EnsemblENSDARG00000028071 (bmp1a)
ZFINZDB-GENE-060818-1 (bmp1a)
Uniprot/SPTREMBLF1REM3, F1REM3_DANRE

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