D. rerio Gene: cabp5b - ENSDARG00000028485 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000028485
Namecabp5b
Descriptioncalcium binding protein 5b [Source:ZFIN;Acc:ZDB-GENE-050522-146]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:109977

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.70e3
  • 1.70e3
  • 9.72e3
94.31
  • 94.31
  • 67.44
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
7.95e3
  • 7.95e3
  • 2.12e4
  • 2.47e4
  • 2.77e4
73.37
  • 73.37
  • 29.15
  • 17.29
  • 7.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
9.43e3
  • 9.43e3
  • 1.08e4
  • 1.25e4
  • 1.41e4
  • 1.81e4
68.43
  • 68.43
  • 63.97
  • 58.31
  • 52.93
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
1.05e4
  • 1.05e4
  • 1.18e4
  • 1.49e4
64.98
  • 64.98
  • 60.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.11e4
  • 1.11e4
  • 1.15e4
  • 1.63e4
62.76
  • 62.76
  • 61.46
  • 45.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.14e4
  • 1.14e4
  • 1.65e4
61.97
  • 61.97
  • 44.65
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
  • 1.50e4
56.48
  • 56.48
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.20e4
  • 2.20e4
26.33
  • 26.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC095100, BX649541
EnsemblENSDARG00000028485 (cabp5b)
Uniprot/SPTREMBLQ504A7, Q504A7_DANRE
ZFINZDB-GENE-050522-146 (cabp5b)

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