D. rerio Gene: fam188a - ENSDARG00000028715 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000028715
Namefam188a
Descriptionfamily with sequence similarity 188, member A [Source:ZFIN;Acc:ZDB-GENE-061110-13]
OrganismDanio rerio (zebrafish)
Synonym(s)carp, fb94a02, wu:fb94a02, wu:fy30f06, zgc:153892
Orthologs(s)29 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.54e3
  • 1.54e3
94.83
  • 94.83
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
2.67e3
  • 2.67e3
  • 3.55e3
  • 3.70e3
  • 9.77e3
  • 1.15e4
91.07
  • 91.07
  • 88.13
  • 87.63
  • 67.28
  • 61.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.86e3
  • 2.86e3
  • 5.93e3
  • 7.92e3
  • 9.08e3
  • 9.19e3
  • 9.73e3
  • 1.05e4
  • 1.06e4
  • 1.16e4
  • 1.17e4
  • 1.22e4
  • 1.23e4
  • 1.23e4
  • 1.24e4
  • 1.44e4
  • 1.45e4
  • 1.47e4
90.42
  • 90.42
  • 80.15
  • 73.49
  • 69.58
  • 69.21
  • 67.42
  • 64.69
  • 64.42
  • 61.26
  • 60.86
  • 59.30
  • 58.86
  • 58.73
  • 58.60
  • 51.82
  • 51.56
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.02e3
  • 3.02e3
89.89
  • 89.89
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.53e3
  • 3.53e3
88.19
  • 88.19
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.37e3
  • 4.37e3
  • 4.51e3
  • 6.03e3
  • 6.50e3
85.36
  • 85.36
  • 84.89
  • 79.83
  • 78.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.43e3
  • 4.43e3
85.16
  • 85.16
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.50e3
  • 4.50e3
84.94
  • 84.94
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.81e3
  • 4.81e3
  • 9.12e3
83.88
  • 83.88
  • 69.48
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.83e3
  • 4.83e3
83.84
  • 83.84
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.76e3
  • 5.76e3
80.73
  • 80.73
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.75e3
  • 6.75e3
77.42
  • 77.42
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.82e3
  • 6.82e3
77.16
  • 77.16
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
6.93e3
  • 6.93e3
  • 9.38e3
76.80
  • 76.80
  • 68.59
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
6.96e3
  • 6.96e3
  • 9.16e3
  • 9.68e3
  • 9.80e3
  • 1.05e4
  • 1.06e4
  • 1.08e4
  • 1.10e4
  • 1.18e4
  • 1.21e4
76.69
  • 76.69
  • 69.32
  • 67.60
  • 67.20
  • 64.85
  • 64.35
  • 63.88
  • 63.02
  • 60.47
  • 59.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.40e3
  • 7.40e3
75.21
  • 75.21
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.28e3
  • 8.28e3
72.27
  • 72.27
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
8.50e3
  • 8.50e3
  • 8.69e3
  • 9.47e3
71.52
  • 71.52
  • 70.89
  • 68.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.53e3
  • 8.53e3
71.45
  • 71.45
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.62e3
  • 8.62e3
71.15
  • 71.15
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.85e3
  • 8.85e3
70.37
  • 70.37
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
8.89e3
  • 8.89e3
70.22
  • 70.22
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.06e3
  • 9.06e3
  • 1.17e4
69.66
  • 69.66
  • 60.78
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.58e3
  • 9.58e3
67.91
  • 67.91
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.64e3
  • 9.64e3
67.73
  • 67.73
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.99e3
  • 9.99e3
66.56
  • 66.56
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.01e4
  • 1.01e4
66.02
  • 66.02
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.21
  • 64.21
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.95
  • 62.95
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.03
  • 61.03
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.71
  • 60.71
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.65
  • 60.65
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
1.23e4
  • 1.23e4
  • 1.27e4
  • 1.28e4
  • 1.37e4
  • 1.39e4
58.87
  • 58.87
  • 57.55
  • 57.17
  • 53.97
  • 53.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species23 genesCompare expression
Bilateria25 species29 genesCompare expression

Orthology information comes from OMA : ENSDARG00000028715.

Cross-references

EnsemblENSDARG00000028715 (fam188a)
ZFINZDB-GENE-061110-13 (fam188a)
EMBLBC124766
Uniprot/SWISSPROTA0AUR5, F188A_DANRE

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