D. rerio Gene: chst12a - ENSDARG00000028786 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000028786
Namechst12a
Descriptioncarbohydrate (chondroitin 4) sulfotransferase 12a [Source:ZFIN;Acc:ZDB-GENE-081022-13]
OrganismDanio rerio (zebrafish)
Synonym(s)c4st-2, chst12, csht12, csht12gn, zc4st-2, zc4st-2gn, zgc:193508, zgc:193523

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
3.76e3
  • 3.76e3
87.42
  • 87.42
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:00072322 cell stage
6.79e3
  • 6.79e3
77.27
  • 77.27
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
7.83e3
  • 7.83e3
  • 1.23e4
73.79
  • 73.79
  • 58.90
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.55e3
  • 8.55e3
71.37
  • 71.37
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.24
  • 65.24
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
  • 1.45e4
  • 1.49e4
  • 1.70e4
62.50
  • 62.50
  • 51.47
  • 50.00
  • 43.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.15e4
  • 1.15e4
61.51
  • 61.51
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.21e4
  • 1.21e4
  • 1.28e4
59.36
  • 59.36
  • 57.13
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.68
  • 58.68
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.29e4
  • 1.29e4
  • 1.54e4
  • 1.55e4
  • 1.60e4
  • 1.70e4
56.92
  • 56.92
  • 48.47
  • 48.23
  • 46.36
  • 43.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
1.32e4
  • 1.32e4
  • 1.34e4
55.97
  • 55.97
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.41e4
55.83
  • 55.83
  • 52.78
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.71
  • 53.71
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.41
  • 52.41
AEIR
  • AEIR
UBERON:0011004pharyngeal arch cartilage
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.49e4
  • 1.49e4
49.97
  • 49.97
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.72
  • 49.72
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.05
  • 49.05
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.87
  • 48.87
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.24
  • 48.24
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.09
  • 47.09
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.06
  • 47.06
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.58e4
  • 1.58e4
46.97
  • 46.97
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.62
  • 46.62
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.86
  • 45.86
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.85
  • 44.85
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.78e4
  • 1.78e4
  • 1.81e4
40.23
  • 40.23
  • 39.51
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.18
  • 28.18
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC162067, BC162078, BX324110
EnsemblENSDARG00000028786 (chst12a)
Uniprot/SPTREMBLB3DFJ6, B3DFJ6_DANRE
ZFINZDB-GENE-081022-13 (chst12a)

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