D. rerio Gene: taf1b - ENSDARG00000028937 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000028937
Nametaf1b
DescriptionTATA box binding protein (Tbp)-associated factor, RNA polymerase I, B [Source:ZFIN;Acc:ZDB-GENE-041008-2]
OrganismDanio rerio (zebrafish)
Synonym(s)q5riq5, q6drh0, si:dkey-81b15.4, tafi63, zgc:110402
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.70e3
  • 3.70e3
  • 1.66e4
87.61
  • 87.61
  • 44.26
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.50e3
  • 5.50e3
81.60
  • 81.60
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.52e3
  • 6.52e3
78.16
  • 78.16
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
6.74e3
  • 6.74e3
  • 9.64e3
77.42
  • 77.42
  • 67.73
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.30e3
  • 7.30e3
75.58
  • 75.58
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
8.75e3
  • 8.75e3
  • 1.03e4
70.70
  • 70.70
  • 65.55
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.04e3
  • 9.04e3
69.73
  • 69.73
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.25
  • 66.25
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.10
  • 66.10
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.72
  • 65.72
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.81
  • 63.81
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.10e4
  • 1.10e4
  • 1.13e4
  • 1.36e4
  • 1.37e4
  • 1.40e4
63.15
  • 63.15
  • 62.05
  • 54.35
  • 54.03
  • 53.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.74
  • 62.74
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.61
  • 62.61
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.17
  • 62.17
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.05
  • 62.05
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.21e4
  • 1.21e4
59.54
  • 59.54
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.22e4
  • 1.22e4
59.10
  • 59.10
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.26e4
  • 1.26e4
  • 1.28e4
57.67
  • 57.67
  • 57.04
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.66
  • 57.66
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.31e4
  • 1.31e4
  • 1.55e4
56.16
  • 56.16
  • 48.22
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.70
  • 55.70
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.36
  • 55.36
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.36
  • 54.36
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.30
  • 53.30
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000028937 (taf1b)
ZFINZDB-GENE-041008-2 (taf1b)
EMBLAY648789, BX248136
Uniprot/SPTREMBLA0A0A0MPI2, A0A0A0MPI2_DANRE
Uniprot/SWISSPROTF1R3W0, TAF1B_DANRE

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