D. rerio Gene: rbbp4 - ENSDARG00000029058 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029058
Namerbbp4
Descriptionretinoblastoma binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-445]
OrganismDanio rerio (zebrafish)
Synonym(s)rbb4, rbb4 {eco:0000313|embl:aai55194.1,gn eco:0000313|ensembl:ensdarp00000048143,gn eco:0000313|zfin:, rbb4-2, rbb4-2gn, wu:fb33a09, wu:fb40e10, zgc:55349, zgc:77854

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
201
  • 201
99.33
  • 99.33
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • UBERON:0000068embryo stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
229
  • 229
  • 490
  • 505
  • 513
  • 543
  • 574
  • 593
  • 599
  • 636
  • 779
  • 1.05e3
  • 1.17e3
  • 1.46e3
  • 1.56e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.86e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
  • 9.51e3
  • 9.51e3
  • 9.51e3
  • 1.30e4
  • 1.41e4
99.24
  • 99.24
  • 98.36
  • 98.31
  • 98.28
  • 98.18
  • 98.08
  • 98.02
  • 98.00
  • 97.87
  • 97.40
  • 96.47
  • 96.08
  • 95.10
  • 94.79
  • 83.33
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.68
  • 73.52
  • 69.99
  • 69.99
  • 68.17
  • 68.17
  • 68.17
  • 56.36
  • 52.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
258
  • 258
99.14
  • 99.14
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
355
  • 355
98.82
  • 98.82
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
425
  • 425
  • 891
  • 1.80e3
  • 1.85e3
  • 1.94e3
98.58
  • 98.58
  • 97.02
  • 93.97
  • 93.81
  • 93.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
458
  • 458
98.47
  • 98.47
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
483
  • 483
  • 494
  • 523
  • 537
  • 884
  • 1.04e3
98.39
  • 98.39
  • 98.35
  • 98.25
  • 98.21
  • 97.04
  • 96.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
573
  • 573
  • 3.06e3
98.09
  • 98.09
  • 89.75
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
597
  • 597
  • 612
  • 675
  • 678
  • 743
  • 785
  • 830
  • 1.26e3
  • 1.40e3
  • 2.05e3
98.00
  • 98.00
  • 97.95
  • 97.74
  • 97.73
  • 97.52
  • 97.37
  • 97.22
  • 95.80
  • 95.32
  • 93.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
614
  • 614
97.95
  • 97.95
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
693
  • 693
97.68
  • 97.68
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
755
  • 755
  • 913
  • 2.96e3
  • 3.06e3
97.47
  • 97.47
  • 96.95
  • 90.10
  • 89.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
770
  • 770
97.42
  • 97.42
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
982
  • 982
  • 1.44e4
96.72
  • 96.72
  • 51.84
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.06e3
  • 1.06e3
96.45
  • 96.45
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.11e3
  • 1.11e3
  • 3.82e3
  • 1.21e4
96.27
  • 96.27
  • 87.21
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.27e3
  • 1.27e3
95.75
  • 95.75
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.29e3
  • 1.29e3
95.68
  • 95.68
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.37e3
  • 1.37e3
95.41
  • 95.41
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.42e3
  • 1.42e3
  • 1.60e3
  • 2.22e3
95.26
  • 95.26
  • 94.65
  • 92.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.47e3
  • 1.47e3
  • 4.77e3
95.08
  • 95.08
  • 84.03
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.56e3
  • 1.56e3
94.79
  • 94.79
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.63e3
  • 1.63e3
94.54
  • 94.54
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.88e3
  • 1.88e3
93.70
  • 93.70
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.29e3
  • 2.29e3
92.33
  • 92.33
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.38e3
  • 2.38e3
92.04
  • 92.04
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.58e3
  • 2.58e3
  • 3.57e3
91.38
  • 91.38
  • 88.04
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.74e3
  • 2.74e3
90.84
  • 90.84
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.77e3
  • 2.77e3
90.72
  • 90.72
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.13e3
  • 3.13e3
89.53
  • 89.53
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.18e3
  • 3.18e3
89.35
  • 89.35
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.21e3
  • 3.21e3
89.27
  • 89.27
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
3.32e3
  • 3.32e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.72e3
  • 6.89e3
  • 6.97e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
88.89
  • 88.89
  • 78.57
  • 78.57
  • 78.57
  • 77.49
  • 76.92
  • 76.66
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 74.99
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.28e3
  • 4.28e3
85.69
  • 85.69
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.46e3
  • 5.46e3
81.71
  • 81.71
AEIR
  • AEIR
UBERON:0001016nervous system
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.22e4
  • 1.22e4
59.19
  • 59.19
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.46e4
55.82
  • 55.82
  • 51.26
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC155193, BX000986, BX465206
EnsemblENSDARG00000029058 (rbbp4)
Uniprot/SPTREMBLQ1LXD4, Q1LXD4_DANRE
ZFINZDB-GENE-030131-445 (rbbp4)

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