D. rerio Gene: foxd1 - ENSDARG00000029179 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029179
Namefoxd1
Descriptionforkhead box D1 [Source:ZFIN;Acc:ZDB-GENE-040426-2094]
OrganismDanio rerio (zebrafish)
Synonym(s)foxd1.1, foxd1l, zgc:76875

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.72e3
  • 3.72e3
87.55
  • 87.55
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.20e3
  • 4.20e3
  • 4.62e3
  • 6.49e3
  • 7.65e3
  • 1.22e4
85.95
  • 85.95
  • 84.54
  • 78.28
  • 74.38
  • 59.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.59e3
  • 4.59e3
  • 8.13e3
84.64
  • 84.64
  • 72.77
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
5.29e3
  • 5.29e3
  • 7.12e3
  • 7.80e3
  • 1.15e4
  • 1.20e4
  • 1.50e4
82.29
  • 82.29
  • 76.18
  • 73.90
  • 61.34
  • 59.98
  • 49.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000026Segmentation:14-19 somites
5.97e3
  • 5.97e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
6.22e3
  • 6.22e3
  • 6.22e3
  • 6.79e3
  • 7.47e3
  • 7.47e3
79.16
  • 79.16
  • 79.16
  • 77.27
  • 74.99
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
6.64e3
  • 6.64e3
77.77
  • 77.77
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
6.89e3
  • 6.89e3
  • 8.04e3
  • 8.79e3
  • 8.79e3
  • 9.13e3
76.92
  • 76.92
  • 73.07
  • 70.57
  • 70.57
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.30e3
  • 1.15e4
  • 1.21e4
74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.52
  • 72.21
  • 61.53
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
7.91e3
  • 7.91e3
  • 7.91e3
  • 7.91e3
  • 1.12e4
73.52
  • 73.52
  • 73.52
  • 73.52
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.45e3
  • 8.45e3
  • 8.45e3
  • 8.65e3
  • 8.72e3
  • 8.83e3
  • 1.23e4
  • 1.25e4
71.72
  • 71.72
  • 71.72
  • 71.04
  • 70.81
  • 70.44
  • 58.80
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.68e3
  • 8.68e3
70.95
  • 70.95
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.45
  • 63.45
AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.19e4
62.50
  • 62.50
  • 59.99
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.23e4
  • 1.23e4
58.77
  • 58.77
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.33e4
  • 1.33e4
  • 1.59e4
55.32
  • 55.32
  • 46.72
AEIR
  • AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.57
  • 50.57
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.52e4
  • 1.52e4
49.11
  • 49.11
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.35
  • 48.35
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
43.97
  • 43.97
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.79
  • 42.79
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.64
  • 37.64
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.55
  • 34.55
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.79
  • 33.79
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.09
  • 33.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLCR377210
EnsemblENSDARG00000029179 (foxd1)
Uniprot/SPTREMBLA2CE80, A2CE80_DANRE
ZFINZDB-GENE-040426-2094 (foxd1)

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