D. rerio Gene: stxbp5b - ENSDARG00000029234 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029234
Namestxbp5b
Descriptionsyntaxin binding protein 5b (tomosyn) [Source:ZFIN;Acc:ZDB-GENE-090821-5]
OrganismDanio rerio (zebrafish)
Orthologs(s)6 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.24e3
  • 5.24e3
82.47
  • 82.47
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.02e3
  • 7.02e3
76.49
  • 76.49
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.94e3
  • 8.94e3
70.06
  • 70.06
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
9.26e3
  • 9.26e3
  • 9.94e3
68.98
  • 68.98
  • 66.71
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.82e3
  • 9.82e3
67.13
  • 67.13
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.28
  • 65.28
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.74
  • 61.74
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.59
  • 61.59
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.18e4
  • 1.18e4
  • 1.31e4
60.52
  • 60.52
  • 56.04
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
  • 1.55e4
59.01
  • 59.01
  • 48.14
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.72
  • 58.72
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.88
  • 57.88
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.08
  • 53.08
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.80
  • 52.80
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
1.42e4
  • 1.42e4
  • 1.51e4
  • 1.57e4
  • 1.60e4
  • 1.84e4
52.46
  • 52.46
  • 49.39
  • 47.47
  • 46.33
  • 38.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.71
  • 49.71
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.29
  • 48.29
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.84
  • 47.84
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.02
  • 45.02
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.00
  • 45.00
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.35
  • 43.35
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
  • 1.93e4
37.09
  • 37.09
  • 35.31
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.90e4
  • 1.90e4
  • 1.93e4
36.45
  • 36.45
  • 35.34
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.43
  • 36.43
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria6 species6 genesCompare expression

Orthology information comes from OMA : ENSDARG00000029234.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000029234.

Cross-references

EnsemblENSDARG00000029234 (stxbp5b)
ZFINZDB-GENE-090821-5 (stxbp5b)
EMBLCABZ01057750, CABZ01057751, CABZ01057752, CABZ01057753, CABZ01057754, CABZ01057755, CABZ01057756, CABZ01057757
Uniprot/SPTREMBLE7F0C0, E7F0C0_DANRE

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