D. rerio Gene: stx11b.1 - ENSDARG00000029290 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029290
Namestx11b.1
Descriptionsyntaxin 11b, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1893]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:63558, zgc:77855
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.64e3
  • 1.64e3
94.51
  • 94.51
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
3.67e3
  • 3.67e3
  • 5.31e3
87.73
  • 87.73
  • 82.24
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.31e3
  • 4.31e3
85.58
  • 85.58
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.88e3
  • 4.88e3
  • 1.07e4
83.66
  • 83.66
  • 64.13
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
5.16e3
  • 5.16e3
  • 5.38e3
  • 6.66e3
  • 9.01e3
  • 9.32e3
82.72
  • 82.72
  • 81.97
  • 77.72
  • 69.82
  • 68.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.17e3
  • 6.17e3
  • 8.30e3
79.34
  • 79.34
  • 72.20
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.28e3
  • 7.28e3
  • 1.50e4
75.62
  • 75.62
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.57e3
  • 9.57e3
67.96
  • 67.96
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.68
  • 64.68
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.08e4
  • 1.08e4
63.98
  • 63.98
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.70
  • 63.70
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.42
  • 55.42
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.52e4
  • 1.52e4
49.01
  • 49.01
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.46
  • 48.46
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.51
  • 44.51
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.14e4
  • 2.14e4
28.21
  • 28.21
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.11
  • 28.11
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000029290.

Cross-references

EnsemblENSDARG00000029290 (stx11b.1)
ZFINZDB-GENE-040426-1893 (stx11b.1)
EMBLBC062862, BX537272
Uniprot/SPTREMBLQ6P5J5, Q6P5J5_DANRE

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