D. rerio Gene: atxn7l3 - ENSDARG00000029331 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029331
Nameatxn7l3
Descriptionataxin 7-like 3 [Source:ZFIN;Acc:ZDB-GENE-030616-253]
OrganismDanio rerio (zebrafish)
Synonym(s)si:busm1-180g5.4, si:dz180g5.4, wu:fj12f07, zgc:136438, zgc:158566
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
2.57e3
  • 2.57e3
  • 1.15e4
  • 1.49e4
91.39
  • 91.39
  • 61.57
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
3.09e3
  • 3.09e3
  • 4.93e3
  • 6.29e3
  • 6.91e3
89.67
  • 89.67
  • 83.51
  • 78.93
  • 76.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.49e3
  • 5.49e3
81.64
  • 81.64
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.85e3
  • 5.85e3
  • 6.56e3
80.41
  • 80.41
  • 78.04
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.39e3
  • 6.39e3
78.62
  • 78.62
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.64e3
  • 6.64e3
77.75
  • 77.75
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
6.67e3
  • 6.67e3
  • 1.03e4
  • 1.20e4
  • 1.23e4
  • 1.37e4
77.67
  • 77.67
  • 65.43
  • 59.72
  • 58.74
  • 54.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
7.57e3
  • 7.57e3
  • 1.02e4
  • 1.12e4
  • 1.36e4
  • 1.40e4
  • 1.41e4
  • 1.75e4
  • 1.78e4
  • 1.78e4
74.66
  • 74.66
  • 65.83
  • 62.65
  • 54.56
  • 52.96
  • 52.69
  • 41.29
  • 40.40
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.61e3
  • 7.61e3
  • 1.11e4
74.51
  • 74.51
  • 62.78
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.64e3
  • 7.64e3
74.41
  • 74.41
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.69e3
  • 7.69e3
74.26
  • 74.26
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
7.92e3
  • 7.92e3
  • 8.83e3
  • 1.24e4
  • 1.38e4
  • 1.43e4
  • 1.47e4
  • 1.54e4
  • 1.56e4
  • 1.56e4
  • 1.57e4
  • 1.57e4
  • 1.58e4
  • 1.58e4
  • 1.59e4
73.50
  • 73.50
  • 70.44
  • 58.36
  • 53.92
  • 52.16
  • 50.68
  • 48.36
  • 47.77
  • 47.73
  • 47.58
  • 47.32
  • 47.14
  • 47.09
  • 46.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.95e3
  • 7.95e3
73.40
  • 73.40
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.99e3
  • 7.99e3
73.26
  • 73.26
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
8.01e3
  • 8.01e3
  • 1.09e4
  • 1.21e4
73.17
  • 73.17
  • 63.46
  • 59.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.21e3
  • 8.21e3
72.53
  • 72.53
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.24e3
  • 8.24e3
72.42
  • 72.42
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.38e3
  • 8.38e3
71.94
  • 71.94
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.39e3
  • 8.39e3
71.90
  • 71.90
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.57e3
  • 8.57e3
71.30
  • 71.30
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.14e3
  • 9.14e3
69.38
  • 69.38
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.24e3
  • 9.24e3
69.05
  • 69.05
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.29e3
  • 9.29e3
68.90
  • 68.90
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.86e3
  • 9.86e3
66.98
  • 66.98
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.28
  • 63.28
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.21
  • 63.21
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.15e4
  • 1.15e4
61.60
  • 61.60
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
1.18e4
  • 1.18e4
  • 1.34e4
  • 1.42e4
  • 1.47e4
60.42
  • 60.42
  • 55.20
  • 52.46
  • 50.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.20e4
  • 1.20e4
59.87
  • 59.87
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.25e4
  • 1.25e4
  • 1.39e4
57.98
  • 57.98
  • 53.48
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000029331 (atxn7l3)
ZFINZDB-GENE-030616-253 (atxn7l3)
EMBLBX088544
Uniprot/SPTREMBLF1QMW7, F1QMW7_DANRE

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