D. rerio Gene: sort1a - ENSDARG00000029402 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029402
Namesort1a
Descriptionsortilin 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2329]
OrganismDanio rerio (zebrafish)
Synonym(s)sort1, zgc:85953

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
607
  • 607
97.97
  • 97.97
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
4.60e3
  • 4.60e3
84.61
  • 84.61
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.95e3
  • 4.95e3
  • 5.93e3
83.42
  • 83.42
  • 80.14
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
5.37e3
  • 5.37e3
82.04
  • 82.04
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
5.52e3
  • 5.52e3
  • 9.60e3
81.53
  • 81.53
  • 67.87
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.71e3
  • 5.71e3
80.89
  • 80.89
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
5.81e3
  • 5.81e3
  • 6.79e3
80.54
  • 80.54
  • 77.26
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.00e3
  • 6.00e3
79.91
  • 79.91
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.05e3
  • 6.05e3
79.73
  • 79.73
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
79.22
  • 79.22
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.32e3
  • 6.32e3
78.83
  • 78.83
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
6.51e3
  • 6.51e3
  • 6.93e3
78.19
  • 78.19
  • 76.79
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
6.61e3
  • 6.61e3
77.86
  • 77.86
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
6.78e3
  • 6.78e3
  • 7.00e3
  • 7.11e3
  • 7.40e3
  • 7.64e3
77.30
  • 77.30
  • 76.58
  • 76.18
  • 75.23
  • 74.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
6.90e3
  • 6.90e3
  • 6.95e3
76.90
  • 76.90
  • 76.73
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.28e3
  • 7.28e3
75.62
  • 75.62
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.36e3
  • 7.36e3
75.36
  • 75.36
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.07e3
  • 8.07e3
72.96
  • 72.96
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.74e3
  • 8.74e3
70.73
  • 70.73
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.03e4
  • 1.03e4
65.37
  • 65.37
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.91
  • 63.91
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.61
  • 60.61
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.50
  • 58.50
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.16
  • 58.16
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.26e4
  • 1.26e4
  • 1.28e4
  • 1.34e4
  • 1.39e4
  • 1.39e4
  • 1.41e4
  • 1.41e4
57.68
  • 57.68
  • 57.13
  • 55.24
  • 53.55
  • 53.31
  • 52.92
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004535cardiovascular system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.29e4
  • 1.29e4
  • 1.39e4
  • 1.39e4
56.65
  • 56.65
  • 53.55
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.93
  • 50.93
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.94
  • 49.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX248230
EnsemblENSDARG00000029402 (sort1a)
Uniprot/SPTREMBLF1R4M6, F1R4M6_DANRE
ZFINZDB-GENE-040426-2329 (sort1a)

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