D. rerio Gene: trim55a - ENSDARG00000029596 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029596
Nametrim55a
Descriptiontripartite motif containing 55a [Source:ZFIN;Acc:ZDB-GENE-040718-50]
OrganismDanio rerio (zebrafish)
Synonym(s)murf2a, trim55, wu:fb71c01, zgc:92123
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
94.70
  • 94.70
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.62e3
  • 2.62e3
91.25
  • 91.25
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
3.77e3
  • 3.77e3
  • 4.58e3
  • 5.45e3
  • 6.85e3
  • 7.97e3
  • 9.98e3
  • 1.02e4
  • 1.28e4
  • 1.30e4
  • 1.30e4
87.38
  • 87.38
  • 84.66
  • 81.77
  • 77.07
  • 73.30
  • 66.57
  • 65.91
  • 57.25
  • 56.36
  • 56.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.25e3
  • 4.25e3
  • 5.59e3
85.78
  • 85.78
  • 81.28
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.35e3
  • 5.35e3
82.09
  • 82.09
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
5.91e3
  • 5.91e3
  • 7.54e3
  • 8.89e3
  • 8.92e3
  • 1.09e4
  • 1.16e4
80.20
  • 80.20
  • 74.77
  • 70.25
  • 70.14
  • 63.44
  • 61.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.83e3
  • 7.83e3
  • 8.52e3
  • 9.37e3
  • 9.40e3
  • 9.48e3
  • 9.70e3
  • 1.13e4
  • 1.14e4
  • 1.18e4
  • 1.20e4
  • 1.23e4
  • 1.29e4
  • 1.29e4
  • 1.30e4
  • 1.45e4
  • 1.47e4
  • 1.50e4
73.77
  • 73.77
  • 71.48
  • 68.63
  • 68.51
  • 68.26
  • 67.52
  • 62.22
  • 61.75
  • 60.52
  • 59.85
  • 58.70
  • 56.70
  • 56.66
  • 56.56
  • 51.42
  • 50.68
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.57e3
  • 8.57e3
71.32
  • 71.32
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
9.09e3
  • 9.09e3
69.55
  • 69.55
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.67e3
  • 9.67e3
  • 9.96e3
  • 1.08e4
67.63
  • 67.63
  • 66.65
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.06e4
  • 1.06e4
  • 1.09e4
  • 1.22e4
64.53
  • 64.53
  • 63.65
  • 59.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003895hypaxial myotome region
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.16e4
  • 1.16e4
  • 1.16e4
61.10
  • 61.10
  • 61.10
AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
  • 1.18e4
60.50
  • 60.50
  • 60.50
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
1.19e4
  • 1.19e4
  • 1.36e4
60.31
  • 60.31
  • 54.41
AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
  • 1.33e4
  • 1.34e4
59.98
  • 59.98
  • 58.31
  • 58.31
  • 55.53
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
  • 1.97e4
58.94
  • 58.94
  • 34.16
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.25e4
  • 1.25e4
58.18
  • 58.18
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.54
  • 56.54
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
55.97
  • 55.97
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.81
  • 55.81
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.20
  • 47.20
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.62
  • 44.62
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.68e4
  • 1.68e4
43.87
  • 43.87
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.81e4
  • 1.81e4
39.50
  • 39.50
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.55
  • 38.55
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.32
  • 37.32
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.36
  • 36.36
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000029596.

Cross-references

EnsemblENSDARG00000029596 (trim55a)
ZFINZDB-GENE-040718-50 (trim55a)
EMBLBC075897, BX324211, CT574558
Uniprot/SPTREMBLQ6DHS0, Q6DHS0_DANRE

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