D. rerio Gene: tkta - ENSDARG00000029689 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029689
Nametkta
Descriptiontransketolase a [Source:ZFIN;Acc:ZDB-GENE-130530-578]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-243c14.1, zmp:0000000575
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
365
  • 365
98.78
  • 98.78
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
800
  • 800
  • 1.25e3
97.32
  • 97.32
  • 95.83
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.75e3
  • 1.75e3
  • 6.32e3
  • 1.04e4
  • 1.88e4
  • 1.94e4
94.14
  • 94.14
  • 78.82
  • 65.06
  • 37.09
  • 34.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.40e3
  • 3.40e3
  • 1.12e4
88.62
  • 88.62
  • 62.56
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.76e3
  • 4.76e3
84.07
  • 84.07
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.21
  • 81.21
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.81e3
  • 9.81e3
67.14
  • 67.14
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.38e4
  • 1.38e4
  • 1.79e4
53.65
  • 53.65
  • 40.02
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.53
  • 48.53
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.34
  • 44.34
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.69
  • 43.69
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.03
  • 43.03
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.81e4
  • 1.81e4
39.56
  • 39.56
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.56
  • 38.56
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.33
  • 32.33
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.13
  • 28.13
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000029689.

Cross-references

EnsemblENSDARG00000029689 (tkta)
ZFINZDB-GENE-130530-578 (tkta)
EMBLBX248521
Uniprot/SPTREMBLE7F8S4, E7F8S4_DANRE

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