D. rerio Gene: rufy3 - ENSDARG00000029692 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029692
Namerufy3
DescriptionRUN and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-58]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7148884, wu:fj64d11, zgc:110543
Orthologs(s)19 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.10e3
  • 1.10e3
  • 1.49e4
96.31
  • 96.31
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.92e3
  • 1.92e3
  • 1.50e4
93.59
  • 93.59
  • 49.93
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.02e3
  • 2.02e3
  • 4.46e3
93.25
  • 93.25
  • 85.08
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
2.02e3
  • 2.02e3
  • 2.91e3
  • 5.79e3
  • 6.15e3
  • 8.08e3
93.25
  • 93.25
  • 90.27
  • 80.61
  • 79.42
  • 72.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.15e3
  • 3.15e3
  • 3.73e3
89.44
  • 89.44
  • 87.50
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.24e3
  • 4.24e3
85.81
  • 85.81
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
5.20e3
  • 5.20e3
  • 6.25e3
82.58
  • 82.58
  • 79.07
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
6.39e3
  • 6.39e3
78.62
  • 78.62
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.83e3
  • 6.83e3
77.12
  • 77.12
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.86e3
  • 6.86e3
77.02
  • 77.02
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.95e3
  • 6.95e3
76.74
  • 76.74
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.00e3
  • 7.00e3
76.56
  • 76.56
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.81e3
  • 7.81e3
73.85
  • 73.85
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.01e3
  • 8.01e3
73.19
  • 73.19
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.32e3
  • 8.32e3
  • 9.05e3
72.16
  • 72.16
  • 69.68
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.69e3
  • 8.69e3
70.89
  • 70.89
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
70.27
  • 70.27
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.93e3
  • 8.93e3
70.10
  • 70.10
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
9.34e3
  • 9.34e3
  • 9.96e3
  • 9.96e3
  • 1.12e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
68.74
  • 68.74
  • 66.65
  • 66.65
  • 62.49
  • 60.70
  • 60.70
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.67
  • 65.67
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.37
  • 65.37
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.43
  • 64.43
AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
1.07e4
  • 1.07e4
64.27
  • 64.27
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.10e4
  • 1.10e4
  • 1.17e4
63.32
  • 63.32
  • 60.70
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.91
  • 62.91
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.15e4
  • 1.21e4
  • 1.21e4
62.48
  • 62.48
  • 62.48
  • 61.34
  • 59.36
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.14e4
  • 1.14e4
  • 1.20e4
61.96
  • 61.96
  • 59.95
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.14e4
  • 1.14e4
  • 1.20e4
61.88
  • 61.88
  • 59.98
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.16e4
  • 1.16e4
  • 1.21e4
61.09
  • 61.09
  • 59.36
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.20e4
  • 1.20e4
  • 1.26e4
59.98
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.38
  • 59.38
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.23e4
  • 1.23e4
  • 1.25e4
58.80
  • 58.80
  • 58.31
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.46e4
55.82
  • 55.82
  • 51.26
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.60
  • 54.60
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.50
  • 53.50
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000029692.

Cross-references

EnsemblENSDARG00000029692 (rufy3)
ZFINZDB-GENE-050327-58 (rufy3)
EMBLBX323596
Uniprot/SPTREMBLF1QI60, F1QI60_DANRE

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