D. rerio Gene: hmgb2a - ENSDARG00000029722 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029722
Namehmgb2a
Descriptionhigh mobility group box 2a [Source:ZFIN;Acc:ZDB-GENE-051120-126]
OrganismDanio rerio (zebrafish)
Synonym(s)hmgb2, wu:fb22b10, wu:fc95d12, zgc:123215

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
16.7
  • 16.7
  • 21.6
  • 22.1
  • 26.9
  • 27.3
  • 114
99.95
  • 99.95
  • 99.93
  • 99.93
  • 99.91
  • 99.91
  • 99.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
17.0
  • 17.0
  • 42.0
  • 46.0
  • 220
  • 429
99.95
  • 99.95
  • 99.86
  • 99.85
  • 99.27
  • 98.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • UBERON:00072334 cell stage
  • ZFS:0000027Segmentation:20-25 somites
23.1
  • 23.1
  • 27.3
  • 31.2
  • 35.5
  • 78.5
  • 83.8
  • 85.1
  • 123
  • 195
  • 313
  • 518
  • 674
  • 766
  • 946
  • 6.79e3
  • 6.97e3
99.93
  • 99.93
  • 99.91
  • 99.90
  • 99.88
  • 99.74
  • 99.72
  • 99.72
  • 99.59
  • 99.35
  • 98.95
  • 98.27
  • 97.75
  • 97.44
  • 96.83
  • 77.27
  • 76.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
34.5
  • 34.5
99.89
  • 99.89
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
35.2
  • 35.2
  • 60.4
  • 102
  • 109
  • 138
  • 149
  • 199
  • 343
  • 705
  • 1.46e3
99.89
  • 99.89
  • 99.80
  • 99.66
  • 99.64
  • 99.54
  • 99.50
  • 99.34
  • 98.85
  • 97.64
  • 95.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
50.0
  • 50.0
99.84
  • 99.84
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
86.3
  • 86.3
99.71
  • 99.71
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
111
  • 111
99.63
  • 99.63
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
134
  • 134
99.56
  • 99.56
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
160
  • 160
99.47
  • 99.47
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
178
  • 178
99.41
  • 99.41
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
183
  • 183
99.39
  • 99.39
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
191
  • 191
  • 1.50e3
99.36
  • 99.36
  • 95.00
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
201
  • 201
  • 481
99.33
  • 99.33
  • 98.39
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
217
  • 217
99.28
  • 99.28
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
273
  • 273
  • 519
99.09
  • 99.09
  • 98.26
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
328
  • 328
98.91
  • 98.91
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
342
  • 342
98.86
  • 98.86
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
345
  • 345
  • 500
  • 539
98.85
  • 98.85
  • 98.33
  • 98.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
362
  • 362
98.79
  • 98.79
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
370
  • 370
  • 669
  • 736
  • 8.18e3
98.77
  • 98.77
  • 97.76
  • 97.54
  • 72.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
414
  • 414
98.62
  • 98.62
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
507
  • 507
98.31
  • 98.31
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
618
  • 618
97.93
  • 97.93
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
672
  • 672
  • 1.49e3
97.75
  • 97.75
  • 95.02
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
688
  • 688
97.70
  • 97.70
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
723
  • 723
97.58
  • 97.58
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
863
  • 863
97.11
  • 97.11
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.18e3
  • 1.18e3
96.05
  • 96.05
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.29e3
  • 1.29e3
95.69
  • 95.69
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.81e3
  • 1.81e3
93.93
  • 93.93
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000033Hatching:Long-pec
1.17e4
  • 1.17e4
60.70
  • 60.70
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
57.13
  • 57.13
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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