D. rerio Gene: clybl - ENSDARG00000029729 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029729
Nameclybl
Descriptioncitrate lyase beta like [Source:ZFIN;Acc:ZDB-GENE-030516-6]
OrganismDanio rerio (zebrafish)
Synonym(s)cb504, fk25c09, im:6908766, wu:fk25c09, zgc:123316, zgc:136594

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
3.82e3
  • 3.82e3
  • 5.67e3
  • 1.21e4
87.21
  • 87.21
  • 81.03
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
4.72e3
  • 4.72e3
  • 5.50e3
  • 6.54e3
  • 6.64e3
  • 8.65e3
  • 9.13e3
  • 9.34e3
  • 1.34e4
84.20
  • 84.20
  • 81.57
  • 78.12
  • 77.77
  • 71.04
  • 69.43
  • 68.73
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.85e3
  • 4.85e3
83.78
  • 83.78
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
4.96e3
  • 4.96e3
  • 1.01e4
  • 1.03e4
  • 1.12e4
83.40
  • 83.40
  • 66.17
  • 65.60
  • 62.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.21e3
  • 5.21e3
  • 1.47e4
82.56
  • 82.56
  • 50.63
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.59e3
  • 5.59e3
  • 1.35e4
81.27
  • 81.27
  • 54.95
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.67e3
  • 5.67e3
81.02
  • 81.02
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
6.00e3
  • 6.00e3
  • 1.13e4
79.93
  • 79.93
  • 62.07
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.08e3
  • 6.08e3
79.65
  • 79.65
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
6.50e3
  • 6.50e3
  • 6.64e3
  • 6.79e3
  • 7.03e3
  • 9.34e3
  • 9.44e3
  • 9.75e3
  • 1.16e4
78.25
  • 78.25
  • 77.77
  • 77.26
  • 76.46
  • 68.73
  • 68.40
  • 67.37
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.61e3
  • 6.61e3
77.86
  • 77.86
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.70e3
  • 6.70e3
77.57
  • 77.57
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.90e3
  • 6.90e3
76.91
  • 76.91
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.00e3
  • 7.00e3
76.56
  • 76.56
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.03e3
  • 7.03e3
  • 7.08e3
  • 7.47e3
  • 7.47e3
76.46
  • 76.46
  • 76.30
  • 74.99
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.11e3
  • 7.11e3
76.19
  • 76.19
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
7.40e3
  • 7.40e3
  • 1.03e4
  • 1.18e4
  • 1.25e4
  • 1.26e4
  • 1.28e4
  • 1.32e4
  • 1.43e4
  • 1.44e4
  • 1.44e4
75.21
  • 75.21
  • 65.35
  • 60.63
  • 58.26
  • 57.84
  • 57.13
  • 55.95
  • 52.21
  • 51.78
  • 51.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 8.15e3
74.99
  • 74.99
  • 72.72
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.92e3
  • 7.92e3
  • 9.50e3
  • 1.11e4
73.47
  • 73.47
  • 68.20
  • 62.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.95e3
  • 7.95e3
73.40
  • 73.40
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.04e3
  • 8.04e3
  • 8.54e3
  • 9.96e3
  • 1.05e4
  • 1.08e4
73.07
  • 73.07
  • 71.42
  • 66.65
  • 64.69
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.40e3
  • 8.40e3
  • 8.79e3
71.86
  • 71.86
  • 70.57
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
8.72e3
  • 8.72e3
  • 9.73e3
  • 1.01e4
  • 1.15e4
  • 1.19e4
  • 1.19e4
  • 1.20e4
  • 1.28e4
  • 1.28e4
  • 1.29e4
  • 1.30e4
  • 1.33e4
  • 1.33e4
  • 1.41e4
  • 1.46e4
  • 1.47e4
70.82
  • 70.82
  • 67.41
  • 66.35
  • 61.46
  • 60.06
  • 60.00
  • 59.69
  • 57.19
  • 57.16
  • 56.90
  • 56.54
  • 55.60
  • 55.42
  • 52.63
  • 51.12
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.31e3
  • 9.31e3
68.82
  • 68.82
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.32e3
  • 9.32e3
68.78
  • 68.78
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
9.39e3
  • 9.39e3
  • 1.50e4
68.57
  • 68.57
  • 49.92
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.55e3
  • 9.55e3
68.04
  • 68.04
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
1.00e4
  • 1.00e4
  • 1.01e4
  • 1.01e4
  • 1.03e4
  • 1.09e4
66.46
  • 66.46
  • 66.12
  • 66.08
  • 65.57
  • 63.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.00e4
  • 1.00e4
66.40
  • 66.40
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.08e4
  • 1.08e4
  • 1.10e4
  • 1.14e4
  • 1.17e4
  • 1.25e4
  • 1.31e4
  • 1.34e4
63.87
  • 63.87
  • 63.32
  • 61.75
  • 60.70
  • 58.31
  • 56.23
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.26
  • 62.26
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.13e4
  • 1.13e4
  • 1.17e4
  • 1.39e4
62.20
  • 62.20
  • 60.95
  • 53.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
  • 1.29e4
58.28
  • 58.28
  • 56.70
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.25e4
  • 1.25e4
58.12
  • 58.12
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
  • 1.34e4
  • 1.41e4
  • 1.42e4
57.12
  • 57.12
  • 54.97
  • 52.75
  • 52.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.40
  • 55.40
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.82
  • 54.82
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
1.42e4
  • 1.42e4
52.47
  • 52.47
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.46e4
  • 1.46e4
51.21
  • 51.21
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.61e4
  • 1.61e4
46.12
  • 46.12
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.49
  • 42.49
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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