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D. rerio Gene: mef2ca - ENSDARG00000029764 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029764
Namemef2ca
Descriptionmyocyte enhancer factor 2ca [Source:ZFIN;Acc:ZDB-GENE-980526-253]
OrganismDanio rerio (zebrafish)
Synonym(s)hoo, hoover, id:ibd5026, mef2c, wu:fc05b06, zgc:64184, zgc:85726
Orthologs(s)19 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
83.1
  • 83.1
  • 912
  • 1.21e4
  • 1.25e4
99.73
  • 99.73
  • 96.95
  • 59.42
  • 58.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
447
  • 447
  • 1.49e4
98.51
  • 98.51
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
575
  • 575
  • 1.52e3
  • 2.05e3
  • 2.26e3
  • 2.41e3
  • 4.25e3
  • 4.28e3
  • 4.54e3
  • 9.28e3
  • 1.22e4
98.08
  • 98.08
  • 94.90
  • 93.16
  • 92.43
  • 91.93
  • 85.76
  • 85.67
  • 84.79
  • 68.93
  • 59.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
622
  • 622
97.92
  • 97.92
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
1.05e3
  • 1.05e3
  • 1.98e3
  • 2.10e3
  • 3.06e3
  • 3.15e3
  • 3.18e3
  • 4.21e3
  • 7.38e3
  • 1.29e4
  • 1.29e4
  • 1.32e4
96.50
  • 96.50
  • 93.37
  • 92.98
  • 89.74
  • 89.45
  • 89.37
  • 85.92
  • 75.28
  • 56.81
  • 56.65
  • 55.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.23e3
  • 1.23e3
95.87
  • 95.87
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
1.47e3
  • 1.47e3
  • 2.01e3
  • 1.26e4
95.10
  • 95.10
  • 93.28
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.53e3
  • 1.53e3
  • 1.49e4
94.89
  • 94.89
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.62e3
  • 1.62e3
94.58
  • 94.58
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.69e3
  • 1.69e3
  • 1.49e4
94.34
  • 94.34
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.29e3
  • 2.29e3
  • 2.85e3
  • 2.94e3
92.33
  • 92.33
  • 90.48
  • 90.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.17e3
  • 3.17e3
89.38
  • 89.38
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.07e3
  • 4.07e3
  • 6.46e3
86.38
  • 86.38
  • 78.39
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.38e3
  • 4.38e3
85.34
  • 85.34
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.40e3
  • 4.40e3
85.27
  • 85.27
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.48e3
  • 4.48e3
84.99
  • 84.99
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.04e3
  • 6.04e3
79.77
  • 79.77
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.14e3
  • 7.14e3
  • 7.91e3
76.10
  • 76.10
  • 73.50
AEIR
  • AEIR
  • AEIR
CL:0000188cell of skeletal muscle
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003099cranial neural crest
  • ZFS:0000027Segmentation:20-25 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0015178somite border
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 1.12e4
75.00
  • 75.00
  • 62.50
AEIR
  • AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 1.12e4
75.00
  • 75.00
  • 62.50
AEIR
  • AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
8.22e3
  • 8.22e3
  • 1.08e4
  • 1.08e4
  • 1.34e4
72.48
  • 72.48
  • 63.87
  • 63.87
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
8.30e3
  • 8.30e3
  • 9.67e3
  • 1.08e4
  • 1.12e4
72.21
  • 72.21
  • 67.63
  • 63.87
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000035Larval:Protruding-mouth
8.40e3
  • 8.40e3
  • 8.40e3
  • 8.54e3
  • 8.79e3
  • 9.13e3
  • 9.19e3
  • 9.60e3
  • 1.36e4
71.86
  • 71.86
  • 71.86
  • 71.42
  • 70.57
  • 69.43
  • 69.22
  • 67.85
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.45e3
  • 8.45e3
71.72
  • 71.72
AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.65e3
  • 8.65e3
  • 1.02e4
71.04
  • 71.04
  • 65.77
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.94e3
  • 8.94e3
70.06
  • 70.06
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
69.99
  • 69.99
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
9.11e3
  • 9.11e3
  • 9.79e3
  • 1.20e4
  • 1.31e4
  • 1.37e4
69.49
  • 69.49
  • 67.21
  • 59.98
  • 56.24
  • 54.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.13e3
  • 9.13e3
  • 9.96e3
  • 1.03e4
69.43
  • 69.43
  • 66.65
  • 65.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.81e3
  • 9.81e3
67.15
  • 67.15
AEIR
  • AEIR
UBERON:0000203pallium
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0003895hypaxial myotome region
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 9.96e3
66.66
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.93
  • 65.93
AEIR
  • AEIR
UBERON:0009881anterior lateral plate mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.07e4
  • 1.07e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.07e4
  • 1.07e4
  • 1.25e4
64.27
  • 64.27
  • 58.31
AEIR
  • AEIR
  • AEIR
CL:0000189slow muscle cell
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.12e4
62.50
  • 62.50
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
1.14e4
  • 1.14e4
  • 1.24e4
61.75
  • 61.75
  • 58.33
AEIR
  • AEIR
  • AEIR
CL:0000190fast muscle cell
  • ZFS:0000029Pharyngula:Prim-5
1.16e4
  • 1.16e4
61.10
  • 61.10
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.17e4
  • 1.17e4
  • 1.46e4
  • 1.55e4
60.67
  • 60.67
  • 50.95
  • 47.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
1.20e4
  • 1.20e4
  • 1.28e4
  • 1.39e4
59.98
  • 59.98
  • 57.11
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.20e4
  • 1.20e4
  • 1.22e4
59.87
  • 59.87
  • 59.23
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.81
  • 57.81
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
UBERON:0002081cardiac atrium
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.22
  • 56.22
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.22
  • 56.22
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.32e4
  • 1.32e4
55.67
  • 55.67
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000035Larval:Protruding-mouth
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.71
  • 50.71
AEIR
  • AEIR
UBERON:0000935anterior commissure
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0010227future cardiac atrium
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004467musculature of pharynx
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0006283future cardiac ventricle
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000029764.

Cross-references

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