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D. rerio Gene: CNGA1 (1 to many) - ENSDARG00000029898 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029898
NameCNGA1 (1 to many)
Descriptionsi:dkey-22i16.2 [Source:ZFIN;Acc:ZDB-GENE-090312-66]
OrganismDanio rerio (zebrafish)
Synonym(s)cncg, cncg1, cng1, rcnc1, rcnca, rp49
Orthologs(s)7 orthologs
Paralog(s)7 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
512
  • 512
  • 8.97e3
  • 1.41e4
98.29
  • 98.29
  • 69.97
  • 52.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.76e3
  • 6.76e3
  • 6.77e3
77.36
  • 77.36
  • 77.34
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.19e4
  • 1.19e4
60.18
  • 60.18
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.35e4
  • 1.35e4
  • 1.36e4
  • 1.36e4
  • 1.75e4
  • 2.42e4
54.70
  • 54.70
  • 54.62
  • 54.62
  • 41.42
  • 19.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000033Hatching:Long-pec
1.38e4
  • 1.38e4
  • 1.58e4
  • 1.59e4
  • 1.76e4
  • 1.77e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.81e4
53.64
  • 53.64
  • 47.06
  • 46.61
  • 41.09
  • 40.62
  • 40.56
  • 40.55
  • 40.43
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.46e4
  • 1.46e4
  • 1.75e4
  • 1.78e4
  • 2.03e4
  • 2.42e4
51.28
  • 51.28
  • 41.29
  • 40.40
  • 31.87
  • 19.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
1.59e4
  • 1.59e4
  • 1.66e4
46.89
  • 46.89
  • 44.32
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.59e4
  • 1.59e4
  • 1.77e4
  • 1.91e4
46.68
  • 46.68
  • 40.74
  • 36.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.60e4
  • 1.60e4
46.31
  • 46.31
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.24e4
  • 2.24e4
24.87
  • 24.87
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000029898.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria5 genesCompare expression
Eukaryota7 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000029898.

Cross-references

EnsemblENSDARG00000029898 (CNGA1 (1 to many))
HGNCHGNC:2148 (CNGA1 (1 to many))
ZFINZDB-GENE-090312-66 (si:dkey-22i16.2)
EMBLCR385050
Uniprot/SPTREMBLB8JHY6, B8JHY6_DANRE, E9QFG9, E9QFG9_DANRE

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