D. rerio Gene: trim54 - ENSDARG00000029907 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029907
Nametrim54
Descriptiontripartite motif containing 54 [Source:ZFIN;Acc:ZDB-GENE-041014-342]
OrganismDanio rerio (zebrafish)
Synonym(s)murf3, si:dkey-221h15.2
Orthologs(s)15 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.83e3
  • 6.83e3
77.12
  • 77.12
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.60e3
  • 8.60e3
71.22
  • 71.22
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
9.35e3
  • 9.35e3
68.68
  • 68.68
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.41
  • 61.41
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.46
  • 50.46
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.48e4
  • 1.48e4
50.35
  • 50.35
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.08
  • 49.08
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
  • 2.13e4
48.56
  • 48.56
  • 28.56
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.59e4
  • 1.59e4
46.87
  • 46.87
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.65
  • 43.65
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.21
  • 42.21
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.24
  • 37.24
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.58
  • 36.58
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.84
  • 33.84
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.98e4
  • 1.98e4
  • 2.27e4
33.82
  • 33.82
  • 23.88
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.99e4
  • 1.99e4
33.43
  • 33.43
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
2.01e4
  • 2.01e4
  • 2.13e4
  • 2.14e4
  • 2.16e4
32.75
  • 32.75
  • 28.83
  • 28.46
  • 27.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000029907.

Cross-references

EnsemblENSDARG00000029907 (trim54)
ZFINZDB-GENE-041014-342 (trim54)
EMBLBX510372, BX511178
Uniprot/SPTREMBLQ5RHH1, Q5RHH1_DANRE, Q5RHH2, Q5RHH2_DANRE

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