D. rerio Gene: SPDEF - ENSDARG00000029930 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000029930
NameSPDEF
DescriptionSAM pointed domain containing ETS transcription factor [Source:HGNC Symbol;Acc:HGNC:17257]
OrganismDanio rerio (zebrafish)
Synonym(s)ba375e1.3, pdef

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.39
  • 53.39
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.89
  • 42.89
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.69
  • 41.69
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.77e4
  • 1.77e4
  • 1.80e4
  • 1.85e4
  • 2.34e4
40.84
  • 40.84
  • 39.71
  • 37.95
  • 21.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
37.94
  • 37.94
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.90e4
  • 1.90e4
  • 2.16e4
36.28
  • 36.28
  • 27.56
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.61
  • 33.61
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
30.07
  • 30.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000029930 (SPDEF)
HGNCHGNC:17257 (SPDEF)
Uniprot/SPTREMBLF1QF97, F1QF97_DANRE

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