Gene: SLC6A7 - ENSDARG00000030006 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000030006
Name	SLC6A7
Description	zgc:158225 [Source:ZFIN;Acc:ZDB-GENE-070112-1492]
Organism	Danio rerio (zebrafish)
Synonym(s)	prot, slc6a7
Orthologs(s)	3 orthologs
Paralog(s)	29 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	3.37e3 3.37e3 6.30e3	88.72 88.72 78.90	AEIR AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	3.76e3 3.76e3	87.41 87.41	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	4.56e3 4.56e3	84.74 84.74	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	5.88e3 5.88e3	80.32 80.32	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	7.70e3 7.70e3 1.73e4	74.23 74.23 42.01	AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	1.02e4 1.02e4 1.64e4	65.76 65.76 45.20	AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.03e4 1.03e4	65.52 65.52	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	1.16e4 1.16e4 1.26e4 1.38e4 1.66e4 1.69e4	61.20 61.20 57.87 53.81 44.27 43.34	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.19e4 1.19e4	60.29 60.29	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.19e4 1.19e4	60.01 60.01	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.22e4 1.22e4	59.12 59.12	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.26e4 1.26e4 1.31e4	57.87 57.87 56.27	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.39e4 1.39e4	53.41 53.41	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.43e4 1.43e4	52.06 52.06	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.49e4 1.49e4	50.14 50.14	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.53e4 1.53e4	48.94 48.94	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	1.59e4 1.59e4	46.62 46.62	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.62e4 1.62e4	45.72 45.72	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.64e4 1.64e4	45.09 45.09	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	1.73e4 1.73e4 1.80e4	41.97 41.97 39.72	AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.74e4 1.74e4	41.75 41.75	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.98e4 1.98e4	33.74 33.74	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	3 species Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	3 genes ENSGALG00000027982 ENSACAG00000003248 ENSXETG00000000228	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000030006.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Eukaryota	29 genes ENSDARG00000000730 slc6a13 ENSDARG00000001354 slc6a13l ENSDARG00000002405 si:ch211-225b11.1 ENSDARG00000004219 SLC6A3 ENSDARG00000012534 slc6a6a ENSDARG00000016141 slc6a2 ENSDARG00000018534 slc6a9 ENSDARG00000018621 slc6a19a.1 ENSDARG00000029866 slc6a14 ENSDARG00000039647 slc6a1b ENSDARG00000041205 slc6a1l ENSDARG00000043646 slc6a8 ENSDARG00000045944 slc6a1a ENSDARG00000046091 si:ch211-283g2.1 ENSDARG00000057017 slc6a4b ENSDARG00000061165 slc6a4a ENSDARG00000061480 si:ch211-132b12.1 ENSDARG00000062821 slc6a15 ENSDARG00000067567 SLC6A13 ENSDARG00000068363 si:ch211-132b12.3 ENSDARG00000068372 zgc:158427 ENSDARG00000068387 slc6a18 ENSDARG00000071235 si:ch211-117c9.5 ENSDARG00000074002 slc6a11a ENSDARG00000087981 slc6a11b ENSDARG00000091560 slc6a19a.2 ENSDARG00000094546 si:ch211-132b12.6 ENSDARG00000094946 si:ch211-132b12.2 ENSDARG00000098438 slc6a6b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000030006.

Cross-references

Ensembl	ENSDARG00000030006 (SLC6A7)
HGNC	HGNC:11054 (SLC6A7)
ZFIN	ZDB-GENE-070112-1492 (zgc:158225)
EMBL	BX511168
Uniprot/SPTREMBL	F1R3N3, F1R3N3_DANRE