D. rerio Gene: lrrfip1a - ENSDARG00000030012 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000030012
Namelrrfip1a
Descriptionleucine rich repeat (in FLII) interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-99]
OrganismDanio rerio (zebrafish)
Synonym(s)hm:zeh1367, lrrfip1, wu:fc06b04, wu:fi15c07, zeh1367

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
214
  • 214
99.29
  • 99.29
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
721
  • 721
  • 751
97.59
  • 97.59
  • 97.49
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
753
  • 753
97.48
  • 97.48
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
920
  • 920
96.92
  • 96.92
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.02e3
  • 1.02e3
96.59
  • 96.59
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.07e3
  • 1.07e3
96.42
  • 96.42
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.10e3
  • 1.10e3
96.31
  • 96.31
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.39e3
  • 1.39e3
95.36
  • 95.36
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.44e3
  • 1.44e3
95.17
  • 95.17
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.80e3
  • 1.80e3
93.99
  • 93.99
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.84e3
  • 1.84e3
  • 7.12e3
  • 8.66e3
  • 1.12e4
93.85
  • 93.85
  • 76.16
  • 70.99
  • 62.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.27e3
  • 2.27e3
92.41
  • 92.41
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.43e3
  • 2.43e3
91.86
  • 91.86
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
2.46e3
  • 2.46e3
  • 4.57e3
  • 1.69e4
91.77
  • 91.77
  • 84.71
  • 43.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
2.59e3
  • 2.59e3
  • 2.97e3
  • 3.91e3
  • 4.48e3
  • 5.00e3
  • 8.04e3
  • 1.07e4
  • 1.30e4
  • 1.34e4
  • 1.38e4
91.32
  • 91.32
  • 90.06
  • 86.92
  • 84.99
  • 83.27
  • 73.08
  • 64.08
  • 56.52
  • 55.17
  • 53.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.81e3
  • 2.81e3
90.61
  • 90.61
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.89e3
  • 2.89e3
90.33
  • 90.33
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.40e3
  • 3.40e3
  • 3.67e3
88.61
  • 88.61
  • 87.71
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.61e3
  • 3.61e3
87.91
  • 87.91
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
3.71e3
  • 3.71e3
  • 1.20e4
  • 1.20e4
  • 1.25e4
  • 1.29e4
87.57
  • 87.57
  • 59.98
  • 59.98
  • 58.30
  • 56.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.82e3
  • 3.82e3
87.22
  • 87.22
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.26e3
  • 5.26e3
82.39
  • 82.39
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.31e3
  • 5.31e3
82.23
  • 82.23
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
6.02e3
  • 6.02e3
  • 1.31e4
79.86
  • 79.86
  • 56.06
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
6.15e3
  • 6.15e3
  • 9.96e3
  • 1.26e4
79.41
  • 79.41
  • 66.65
  • 57.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.88e3
  • 6.88e3
76.95
  • 76.95
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.38e3
  • 7.38e3
75.31
  • 75.31
AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.48e3
  • 7.48e3
74.94
  • 74.94
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
8.63e3
  • 8.63e3
  • 9.94e3
  • 1.69e4
  • 1.72e4
  • 1.75e4
71.10
  • 71.10
  • 66.72
  • 43.58
  • 42.33
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
  • 1.17e4
61.95
  • 61.95
  • 60.88
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
61.88
  • 61.88
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005498primitive heart tube
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.15e4
  • 1.15e4
  • 1.15e4
  • 1.20e4
61.53
  • 61.53
  • 61.53
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.16e4
  • 1.16e4
  • 1.18e4
61.09
  • 61.09
  • 60.50
AEIR
  • AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.26e4
59.98
  • 59.98
  • 58.31
  • 57.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
1.20e4
  • 1.20e4
  • 1.23e4
  • 1.24e4
  • 1.28e4
  • 1.37e4
  • 1.40e4
  • 1.41e4
  • 1.43e4
  • 1.44e4
  • 1.46e4
  • 1.51e4
  • 1.56e4
  • 1.64e4
59.73
  • 59.73
  • 58.97
  • 58.32
  • 57.17
  • 54.22
  • 53.14
  • 52.88
  • 51.97
  • 51.70
  • 51.22
  • 49.52
  • 47.90
  • 45.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000026Segmentation:14-19 somites
1.23e4
  • 1.23e4
58.80
  • 58.80
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.25e4
  • 1.25e4
  • 1.27e4
58.31
  • 58.31
  • 57.47
AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.25e4
  • 1.25e4
  • 1.32e4
  • 1.33e4
58.31
  • 58.31
  • 55.86
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
  • 1.34e4
55.24
  • 55.24
  • 55.24
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000030012 (lrrfip1a)
ZFINZDB-GENE-030131-99 (lrrfip1a)
EMBLCR545476, CT867952
Uniprot/SPTREMBLF1QDT9, F1QDT9_DANRE, F1QGV4, F1QGV4_DANRE, F1QI65, F1QI65_DANRE, G1K2J1, G1K2J1_DANRE, H0WEN2, H0WEN2_DANRE, H1A5Y8, H1A5Y8_DANRE

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