D. rerio Gene: agfg1a - ENSDARG00000030020 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000030020
Nameagfg1a
DescriptionArfGAP with FG repeats 1a [Source:ZFIN;Acc:ZDB-GENE-030131-5808]
OrganismDanio rerio (zebrafish)
Synonym(s)agfg1, hrb, wu:fb14f05, wu:fi19d11

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.02e3
  • 4.02e3
86.56
  • 86.56
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.44e3
  • 4.44e3
85.15
  • 85.15
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.75e3
  • 4.75e3
84.08
  • 84.08
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.01e3
  • 5.01e3
83.22
  • 83.22
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.08e3
  • 5.08e3
82.99
  • 82.99
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.28e3
  • 5.28e3
82.32
  • 82.32
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.62e3
  • 5.62e3
  • 7.19e3
81.20
  • 81.20
  • 75.91
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
5.90e3
  • 5.90e3
  • 7.46e3
  • 7.57e3
  • 9.09e3
80.24
  • 80.24
  • 75.03
  • 74.65
  • 69.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.91e3
  • 5.91e3
80.21
  • 80.21
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.14e3
  • 6.14e3
79.46
  • 79.46
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.16e3
  • 6.16e3
  • 8.25e3
79.37
  • 79.37
  • 72.38
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
6.23e3
  • 6.23e3
  • 6.78e3
  • 7.81e3
  • 7.87e3
  • 9.09e3
  • 9.14e3
  • 9.56e3
  • 1.02e4
  • 1.04e4
  • 1.08e4
79.15
  • 79.15
  • 77.31
  • 73.84
  • 73.64
  • 69.55
  • 69.40
  • 67.99
  • 65.91
  • 65.28
  • 63.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
6.23e3
  • 6.23e3
  • 6.50e3
  • 8.07e3
  • 8.85e3
  • 1.05e4
79.15
  • 79.15
  • 78.22
  • 72.98
  • 70.38
  • 64.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.42e3
  • 6.42e3
78.51
  • 78.51
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.52e3
  • 6.52e3
78.18
  • 78.18
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.94e3
  • 6.94e3
76.77
  • 76.77
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.95e3
  • 6.95e3
76.73
  • 76.73
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.95e3
  • 6.95e3
76.73
  • 76.73
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.07e3
  • 7.07e3
76.34
  • 76.34
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.17e3
  • 7.17e3
75.98
  • 75.98
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
7.26e3
  • 7.26e3
  • 8.01e3
  • 8.11e3
  • 8.64e3
  • 9.91e3
  • 1.02e4
75.70
  • 75.70
  • 73.19
  • 72.83
  • 71.09
  • 66.82
  • 65.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.39e3
  • 7.39e3
75.25
  • 75.25
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.42e3
  • 7.42e3
75.16
  • 75.16
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.67e3
  • 7.67e3
74.33
  • 74.33
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.77e3
  • 7.77e3
  • 9.36e3
74.00
  • 74.00
  • 68.65
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.90e3
  • 7.90e3
73.56
  • 73.56
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.97e3
  • 7.97e3
  • 1.12e4
73.32
  • 73.32
  • 62.63
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.18e3
  • 8.18e3
72.62
  • 72.62
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000066fully formed stage
8.19e3
  • 8.19e3
  • 8.73e3
  • 8.74e3
  • 8.80e3
  • 8.84e3
  • 8.85e3
  • 8.93e3
  • 8.95e3
  • 9.02e3
  • 9.04e3
  • 9.14e3
  • 9.21e3
  • 9.32e3
  • 9.36e3
  • 1.03e4
  • 1.12e4
  • 1.14e4
  • 1.49e4
72.58
  • 72.58
  • 70.78
  • 70.72
  • 70.53
  • 70.39
  • 70.36
  • 70.09
  • 70.02
  • 69.80
  • 69.74
  • 69.40
  • 69.16
  • 68.79
  • 68.67
  • 65.61
  • 62.49
  • 61.75
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.57e3
  • 8.57e3
  • 8.81e3
  • 1.03e4
71.30
  • 71.30
  • 70.49
  • 65.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.86e3
  • 8.86e3
70.34
  • 70.34
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.15e3
  • 9.15e3
69.36
  • 69.36
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.52e3
  • 9.52e3
68.14
  • 68.14
AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.07e4
  • 1.18e4
66.65
  • 66.65
  • 64.27
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.29
  • 66.29
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.84
  • 64.84
AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
1.23e4
  • 1.23e4
58.80
  • 58.80
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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