D. rerio Gene: tbx4 - ENSDARG00000030058 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000030058
Nametbx4
DescriptionT-box 4 [Source:ZFIN;Acc:ZDB-GENE-991124-5]
OrganismDanio rerio (zebrafish)
Synonym(s)zf-tbx4, ztbx4
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003412pelvic appendage bud mesenchyme
  • ZFS:0000042Juvenile:Days 30-44
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.41e3
  • 8.41e3
71.85
  • 71.85
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
9.39e3
  • 9.39e3
  • 1.30e4
  • 1.30e4
68.55
  • 68.55
  • 56.63
  • 56.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.16
  • 58.16
AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.31e4
  • 1.31e4
  • 1.49e4
56.24
  • 56.24
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.22
  • 56.22
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.40
  • 54.40
AEIR
  • AEIR
UBERON:0005420pelvic appendage bud
  • ZFS:0000041Larval:Days 21-29
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
  • 1.86e4
47.50
  • 47.50
  • 37.86
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.65e4
  • 1.65e4
44.85
  • 44.85
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.70e4
  • 1.70e4
  • 1.76e4
  • 1.76e4
  • 1.77e4
  • 1.80e4
42.94
  • 42.94
  • 41.09
  • 40.95
  • 40.73
  • 39.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
1.79e4
  • 1.79e4
  • 1.81e4
  • 1.83e4
  • 1.83e4
  • 1.84e4
40.18
  • 40.18
  • 39.42
  • 38.62
  • 38.57
  • 38.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.83e4
  • 1.83e4
38.74
  • 38.74
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.83e4
  • 1.83e4
  • 2.06e4
38.69
  • 38.69
  • 31.09
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.91e4
  • 1.91e4
35.99
  • 35.99
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
27.09
  • 27.09
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.21e4
  • 2.21e4
25.86
  • 25.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000030058 (tbx4)
ZFINZDB-GENE-991124-5 (tbx4)
EMBLAL954322
Uniprot/SPTREMBLF1R688, F1R688_DANRE

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