D. rerio Gene: ITGB1BP2 - ENSDARG00000030176 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000030176
NameITGB1BP2
Descriptionzgc:92429 [Source:ZFIN;Acc:ZDB-GENE-040801-194]
OrganismDanio rerio (zebrafish)
Synonym(s)chordc3, id:ibd3446

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
896
  • 896
97.00
  • 97.00
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.75e3
  • 1.75e3
94.16
  • 94.16
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.04e3
  • 2.04e3
  • 2.51e3
  • 2.87e3
  • 3.46e3
  • 4.71e3
93.16
  • 93.16
  • 91.59
  • 90.40
  • 88.43
  • 84.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.62e3
  • 2.62e3
91.24
  • 91.24
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.33e3
  • 3.33e3
  • 3.98e3
  • 9.96e3
  • 1.10e4
88.85
  • 88.85
  • 86.69
  • 66.65
  • 63.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.72e3
  • 3.72e3
  • 4.09e3
87.54
  • 87.54
  • 86.30
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
5.77e3
  • 5.77e3
  • 9.96e3
  • 1.28e4
  • 1.49e4
  • 1.50e4
  • 1.50e4
80.67
  • 80.67
  • 66.65
  • 57.18
  • 50.20
  • 49.92
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
9.34e3
  • 9.34e3
  • 1.08e4
  • 1.14e4
  • 1.16e4
68.74
  • 68.74
  • 63.87
  • 61.75
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003895hypaxial myotome region
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.28e4
  • 1.49e4
66.66
  • 66.66
  • 66.66
  • 57.14
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.02e4
  • 1.02e4
  • 1.02e4
65.77
  • 65.77
  • 65.77
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.26
  • 65.26
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.08e4
  • 1.08e4
63.97
  • 63.97
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.51
  • 62.51
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.12e4
  • 1.12e4
  • 1.16e4
  • 1.16e4
  • 1.18e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
62.48
  • 62.48
  • 61.09
  • 61.09
  • 60.50
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.18e4
  • 1.18e4
  • 1.20e4
60.42
  • 60.42
  • 59.89
AEIR
  • AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.26e4
59.98
  • 59.98
  • 58.31
  • 57.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.97
  • 58.97
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.24e4
  • 1.24e4
  • 1.30e4
58.39
  • 58.39
  • 56.49
AEIR
  • AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.25e4
  • 1.25e4
  • 1.27e4
58.31
  • 58.31
  • 57.47
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
  • 1.37e4
56.22
  • 56.22
  • 54.13
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.20
  • 54.20
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.37e4
  • 1.37e4
  • 1.43e4
54.17
  • 54.17
  • 52.05
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.64
  • 52.64
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.48e4
  • 1.48e4
50.49
  • 50.49
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.86
  • 43.86
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.18
  • 40.18
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.14
  • 40.14
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLAL954129, BC078394, CR392038
EnsemblENSDARG00000030176 (ITGB1BP2)
HGNCHGNC:6154 (ITGB1BP2)
Uniprot/SPTREMBLB7ZDD0, B7ZDD0_DANRE, Q6DBR7, Q6DBR7_DANRE
ZFINZDB-GENE-040801-194 (zgc:92429)

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