D. rerio Gene: gtf3aa - ENSDARG00000030267 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000030267
Namegtf3aa
Descriptiongeneral transcription factor IIIAa [Source:ZFIN;Acc:ZDB-GENE-041006-1]
OrganismDanio rerio (zebrafish)
Synonym(s)general transcription factor iiia, gtf3a, tfiiia, zgc:111799
Orthologs(s)19 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
3.44e3
  • 3.44e3
  • 1.35e4
  • 1.56e4
88.48
  • 88.48
  • 54.76
  • 47.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.33e3
  • 4.33e3
85.51
  • 85.51
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.59e3
  • 4.59e3
  • 1.34e4
84.63
  • 84.63
  • 55.05
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
5.05e3
  • 5.05e3
  • 6.76e3
  • 8.65e3
  • 8.87e3
  • 1.05e4
83.09
  • 83.09
  • 77.36
  • 71.05
  • 70.29
  • 64.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000027Segmentation:20-25 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
5.69e3
  • 5.69e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 7.97e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.71e3
  • 8.71e3
  • 8.79e3
  • 9.96e3
  • 9.96e3
  • 1.21e4
  • 1.27e4
  • 1.27e4
  • 1.29e4
  • 1.30e4
  • 1.31e4
  • 1.32e4
  • 1.44e4
  • 1.45e4
  • 1.45e4
  • 1.49e4
  • 1.49e4
  • 1.53e4
  • 1.54e4
  • 1.54e4
  • 1.55e4
80.95
  • 80.95
  • 74.99
  • 74.99
  • 73.52
  • 73.32
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 70.82
  • 70.82
  • 70.57
  • 66.65
  • 66.65
  • 59.35
  • 57.42
  • 57.39
  • 56.96
  • 56.53
  • 56.08
  • 55.74
  • 51.62
  • 51.42
  • 51.29
  • 50.25
  • 50.12
  • 48.83
  • 48.57
  • 48.44
  • 48.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
5.98e3
  • 5.98e3
  • 6.14e3
  • 1.02e4
  • 1.08e4
  • 1.09e4
  • 1.27e4
79.99
  • 79.99
  • 79.44
  • 65.99
  • 63.74
  • 63.56
  • 57.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.10e3
  • 6.10e3
79.57
  • 79.57
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.14e3
  • 6.14e3
  • 7.82e3
  • 8.04e3
  • 9.90e3
  • 1.07e4
  • 1.14e4
  • 1.14e4
  • 1.17e4
  • 1.42e4
  • 1.52e4
79.45
  • 79.45
  • 73.83
  • 73.10
  • 66.86
  • 64.27
  • 61.85
  • 61.83
  • 60.94
  • 52.58
  • 49.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.82e3
  • 6.82e3
77.16
  • 77.16
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.93e3
  • 6.93e3
  • 1.15e4
76.80
  • 76.80
  • 61.53
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.08e3
  • 7.08e3
76.28
  • 76.28
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.37e3
  • 7.37e3
75.33
  • 75.33
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.34e3
  • 8.34e3
  • 1.08e4
72.08
  • 72.08
  • 63.79
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.75e3
  • 8.75e3
70.72
  • 70.72
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.85e3
  • 8.85e3
70.35
  • 70.35
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.18e3
  • 9.18e3
69.28
  • 69.28
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.18e3
  • 9.18e3
69.26
  • 69.26
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.19e3
  • 9.19e3
69.22
  • 69.22
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.23e3
  • 9.23e3
69.10
  • 69.10
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.53e3
  • 9.53e3
68.08
  • 68.08
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.62e3
  • 9.62e3
67.79
  • 67.79
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.67e3
  • 9.67e3
67.63
  • 67.63
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.90e3
  • 9.90e3
66.86
  • 66.86
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.00e4
  • 1.00e4
66.48
  • 66.48
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.01e4
  • 1.01e4
  • 1.37e4
66.33
  • 66.33
  • 53.98
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.99
  • 64.99
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.98
  • 64.98
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.85
  • 61.85
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.20e4
  • 1.20e4
  • 1.35e4
  • 1.62e4
59.86
  • 59.86
  • 54.80
  • 45.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.21e4
  • 1.21e4
59.45
  • 59.45
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.25
  • 58.25
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.94
  • 49.94
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.57e4
  • 1.57e4
  • 1.64e4
47.55
  • 47.55
  • 44.94
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000030267.

Cross-references

EnsemblENSDARG00000030267 (gtf3aa)
ZFINZDB-GENE-041006-1 (gtf3aa)
EMBLBX247876
Uniprot/SPTREMBLA2BEV2, A2BEV2_DANRE, F8W632, F8W632_DANRE

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