D. rerio Gene: mespba - ENSDARG00000030347 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000030347
Namemespba
Descriptionmesoderm posterior ba [Source:ZFIN;Acc:ZDB-GENE-000406-9]
OrganismDanio rerio (zebrafish)
Synonym(s)mesp-b, mespb

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003059presomitic mesoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000022Gastrula:Bud
5.43e3
  • 5.43e3
  • 9.96e3
  • 1.21e4
  • 1.25e4
  • 1.31e4
  • 1.49e4
81.81
  • 81.81
  • 66.65
  • 59.50
  • 58.16
  • 56.24
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
7.03e3
  • 7.03e3
  • 8.22e3
  • 9.13e3
  • 1.08e4
76.46
  • 76.46
  • 72.48
  • 69.43
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.43e3
  • 7.43e3
75.11
  • 75.11
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
7.65e3
  • 7.65e3
  • 8.09e3
  • 1.29e4
74.39
  • 74.39
  • 72.90
  • 56.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
9.07e3
  • 9.07e3
  • 1.17e4
  • 1.31e4
  • 1.82e4
  • 1.88e4
  • 2.05e4
69.64
  • 69.64
  • 60.75
  • 56.17
  • 39.07
  • 37.16
  • 31.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
1.03e4
  • 1.03e4
  • 1.34e4
  • 1.34e4
65.47
  • 65.47
  • 54.99
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.22
  • 65.22
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.08e4
  • 1.08e4
  • 1.22e4
  • 1.25e4
  • 1.29e4
  • 1.33e4
  • 1.41e4
63.85
  • 63.85
  • 59.17
  • 58.07
  • 56.89
  • 55.60
  • 52.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
1.10e4
  • 1.10e4
  • 1.13e4
  • 1.16e4
  • 1.25e4
  • 1.30e4
  • 1.38e4
  • 1.71e4
63.24
  • 63.24
  • 62.09
  • 61.02
  • 58.03
  • 56.61
  • 53.67
  • 42.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.20e4
  • 1.20e4
  • 1.43e4
  • 1.53e4
59.98
  • 59.98
  • 52.27
  • 48.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007285presumptive paraxial mesoderm
  • ZFS:0000021Gastrula:90%-epiboly
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.31
  • 51.31
AEIR
  • AEIR
UBERON:2000725somite 11
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.55e4
  • 1.55e4
48.21
  • 48.21
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.91
  • 46.91
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.18
  • 44.18
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.86
  • 36.86
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
27.79
  • 27.79
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
27.39
  • 27.39
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
27.08
  • 27.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000030347 (mespba)
ZFINZDB-GENE-000406-9 (mespba)
EMBLCR848709
Uniprot/SPTREMBLF1Q9Z5, F1Q9Z5_DANRE

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