D. rerio Gene: twist1a - ENSDARG00000030402 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000030402
Nametwist1a
Descriptiontwist family bHLH transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-000210-6]
OrganismDanio rerio (zebrafish)
Synonym(s)q6dgc2, twist-1, twist1, twist1 {eco:0000313|embl:abc73066.1,gn eco:0000313|zfin:zdb-gene-000210-6}, twist1b, twist1bgn, wu:fd04c01, zgc:101115
Orthologs(s)12 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
2.67e3
  • 2.67e3
  • 3.35e3
  • 4.53e3
  • 8.69e3
  • 9.76e3
  • 9.99e3
  • 1.23e4
  • 1.24e4
  • 1.32e4
  • 1.78e4
91.07
  • 91.07
  • 88.80
  • 84.82
  • 70.91
  • 67.32
  • 66.56
  • 58.91
  • 58.32
  • 55.70
  • 40.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
4.44e3
  • 4.44e3
  • 1.07e4
  • 1.23e4
  • 1.75e4
85.14
  • 85.14
  • 64.28
  • 58.89
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.10e3
  • 5.10e3
82.94
  • 82.94
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.26e3
  • 5.26e3
82.39
  • 82.39
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.61e3
  • 6.61e3
  • 1.64e4
77.89
  • 77.89
  • 44.99
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
6.64e3
  • 6.64e3
  • 7.12e3
  • 8.96e3
77.77
  • 77.77
  • 76.18
  • 69.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003064intermediate mesoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 8.96e3
  • 1.12e4
  • 1.49e4
75.00
  • 75.00
  • 70.00
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007024anterior neural keel
  • ZFS:0000023Segmentation:1-4 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
7.47e3
  • 7.47e3
  • 1.12e4
  • 1.20e4
  • 1.49e4
75.00
  • 75.00
  • 62.49
  • 59.98
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000005Cleavage:16-cell
  • UBERON:00072368 cell stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
7.47e3
  • 7.47e3
  • 9.51e3
  • 1.20e4
  • 1.28e4
  • 1.29e4
  • 1.30e4
  • 1.36e4
  • 1.39e4
  • 1.41e4
  • 1.49e4
  • 1.50e4
  • 1.51e4
  • 1.55e4
  • 1.64e4
  • 1.76e4
  • 1.78e4
74.99
  • 74.99
  • 68.17
  • 59.68
  • 57.12
  • 56.77
  • 56.40
  • 54.49
  • 53.36
  • 52.94
  • 50.20
  • 49.81
  • 49.39
  • 47.98
  • 45.08
  • 41.21
  • 40.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.25e3
  • 8.25e3
72.39
  • 72.39
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.27e3
  • 8.27e3
  • 1.88e4
72.32
  • 72.32
  • 37.01
AEIR
  • AEIR
  • AEIR
UBERON:0001015musculature
  • ZFS:0000035Larval:Protruding-mouth
8.53e3
  • 8.53e3
71.43
  • 71.43
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.58e3
  • 8.58e3
  • 1.13e4
  • 1.60e4
71.28
  • 71.28
  • 62.18
  • 46.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003089sclerotome
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.96e3
  • 8.96e3
  • 1.49e4
  • 1.49e4
70.00
  • 70.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000020Gastrula:75%-epiboly
8.96e3
  • 8.96e3
  • 1.10e4
  • 1.12e4
  • 1.39e4
69.99
  • 69.99
  • 63.32
  • 62.48
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002342neural crest
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
  • 1.12e4
  • 1.19e4
66.67
  • 66.67
  • 62.50
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:2001286caudal vein plexus
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.03e4
  • 1.03e4
  • 1.09e4
65.37
  • 65.37
  • 63.63
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
1.06e4
  • 1.06e4
  • 1.29e4
  • 1.29e4
  • 1.34e4
  • 1.35e4
  • 1.37e4
64.56
  • 64.56
  • 56.86
  • 56.79
  • 54.97
  • 54.95
  • 54.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
  • 1.89e4
61.64
  • 61.64
  • 36.72
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.19e4
  • 1.19e4
  • 1.49e4
60.00
  • 60.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003099cranial neural crest
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.19e4
  • 1.19e4
  • 1.19e4
60.00
  • 60.00
  • 60.00
AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
1.20e4
  • 1.20e4
  • 1.31e4
  • 1.41e4
59.98
  • 59.98
  • 56.23
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
1.21e4
  • 1.21e4
  • 1.22e4
  • 1.41e4
59.36
  • 59.36
  • 59.08
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000031Pharyngula:Prim-25
1.24e4
  • 1.24e4
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.25e4
  • 1.25e4
  • 1.34e4
  • 1.49e4
  • 1.49e4
58.31
  • 58.31
  • 54.99
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.28e4
  • 1.28e4
  • 1.29e4
57.13
  • 57.13
  • 56.65
AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
1.29e4
  • 1.29e4
  • 1.49e4
56.65
  • 56.65
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.20
  • 56.20
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.38e4
  • 1.38e4
  • 1.50e4
53.71
  • 53.71
  • 49.87
AEIR
  • AEIR
  • AEIR
UBERON:0003071eye primordium
  • ZFS:0000023Segmentation:1-4 somites
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000027Segmentation:20-25 somites
1.42e4
  • 1.42e4
52.47
  • 52.47
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.43e4
  • 1.43e4
52.01
  • 52.01
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002201vasculature of trunk
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0006904head mesenchyme from mesoderm
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0008998vasculature of brain
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000610vertical myoseptum
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004017periocular mesenchyme
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
ZFA:0001065lateral mesoderm (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0005729pectoral appendage field
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.40
  • 48.40
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.56e4
  • 1.56e4
47.90
  • 47.90
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.02
  • 45.02
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.70
  • 44.70
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.47
  • 34.47
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
27.15
  • 27.15
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.73
  • 26.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000030402.

Cross-references

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