D. rerio Gene: crabp2b - ENSDARG00000030449 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000030449
Namecrabp2b
Descriptioncellular retinoic acid binding protein 2, b [Source:ZFIN;Acc:ZDB-GENE-050208-52]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7136989
Orthologs(s)18 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
623
  • 623
  • 642
  • 784
  • 856
  • 1.69e3
  • 5.30e3
97.92
  • 97.92
  • 97.85
  • 97.38
  • 97.14
  • 94.36
  • 82.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
774
  • 774
97.41
  • 97.41
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
1.06e3
  • 1.06e3
  • 1.09e3
  • 1.21e3
  • 3.97e3
  • 4.14e3
  • 6.34e3
  • 6.64e3
  • 7.81e3
  • 7.93e3
  • 9.32e3
  • 1.04e4
  • 1.08e4
  • 1.09e4
  • 1.17e4
96.46
  • 96.46
  • 96.35
  • 95.96
  • 86.71
  • 86.15
  • 78.78
  • 77.77
  • 73.85
  • 73.46
  • 68.79
  • 65.05
  • 63.96
  • 63.51
  • 60.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
1.26e3
  • 1.26e3
  • 7.12e3
  • 8.15e3
  • 9.96e3
95.78
  • 95.78
  • 76.18
  • 72.71
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
1.72e3
  • 1.72e3
  • 7.47e3
  • 7.47e3
  • 8.09e3
  • 8.22e3
  • 8.22e3
  • 1.19e4
94.24
  • 94.24
  • 74.98
  • 74.98
  • 72.90
  • 72.48
  • 72.48
  • 60.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.35e3
  • 3.35e3
88.80
  • 88.80
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
  • 1.00e4
86.94
  • 86.94
  • 66.42
AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
4.67e3
  • 4.67e3
  • 5.98e3
  • 5.98e3
  • 1.33e4
84.37
  • 84.37
  • 79.99
  • 79.99
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.99e3
  • 4.99e3
83.28
  • 83.28
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
5.64e3
  • 5.64e3
  • 6.04e3
  • 6.28e3
  • 6.67e3
  • 6.82e3
  • 6.94e3
  • 7.43e3
  • 7.70e3
  • 8.89e3
  • 1.01e4
81.12
  • 81.12
  • 79.79
  • 78.99
  • 77.65
  • 77.16
  • 76.77
  • 75.13
  • 74.22
  • 70.23
  • 66.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
5.75e3
  • 5.75e3
  • 5.75e3
  • 6.40e3
80.76
  • 80.76
  • 80.76
  • 78.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.27e3
  • 6.27e3
79.01
  • 79.01
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
6.34e3
  • 6.34e3
  • 8.10e3
78.78
  • 78.78
  • 72.88
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.55e3
  • 6.55e3
  • 9.30e3
78.07
  • 78.07
  • 68.86
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
6.97e3
  • 6.97e3
  • 7.01e3
  • 7.03e3
  • 9.10e3
  • 1.05e4
  • 1.12e4
76.67
  • 76.67
  • 76.53
  • 76.46
  • 69.55
  • 64.98
  • 62.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.42e3
  • 7.42e3
  • 8.02e3
  • 8.07e3
75.16
  • 75.16
  • 73.16
  • 72.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
7.80e3
  • 7.80e3
  • 8.22e3
  • 8.22e3
73.90
  • 73.90
  • 72.48
  • 72.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.91e3
  • 7.91e3
  • 7.91e3
  • 7.91e3
73.52
  • 73.52
  • 73.52
  • 73.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.01e3
  • 8.01e3
  • 8.22e3
  • 8.22e3
  • 8.83e3
  • 8.83e3
  • 1.02e4
  • 1.05e4
73.19
  • 73.19
  • 72.48
  • 72.48
  • 70.44
  • 70.44
  • 65.77
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
8.15e3
  • 8.15e3
  • 8.22e3
  • 8.96e3
  • 9.10e3
  • 9.47e3
  • 9.96e3
  • 1.02e4
72.71
  • 72.71
  • 72.48
  • 69.98
  • 69.55
  • 68.30
  • 66.65
  • 65.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.40e3
  • 8.40e3
  • 8.40e3
  • 1.02e4
  • 1.02e4
71.86
  • 71.86
  • 71.86
  • 65.77
  • 65.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.48e3
  • 8.48e3
  • 1.80e4
71.61
  • 71.61
  • 39.78
AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.65e3
  • 8.65e3
  • 9.44e3
  • 9.67e3
  • 1.14e4
71.04
  • 71.04
  • 68.40
  • 67.63
  • 61.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
1.10e4
  • 1.10e4
  • 1.15e4
  • 1.15e4
  • 1.15e4
  • 1.15e4
  • 1.15e4
  • 1.42e4
63.32
  • 63.32
  • 61.53
  • 61.53
  • 61.53
  • 61.53
  • 61.53
  • 52.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.78
  • 62.78
AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.07
  • 61.07
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.59
  • 59.59
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.03
  • 59.03
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.41
  • 58.41
AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
1.26e4
  • 1.26e4
57.68
  • 57.68
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
  • 1.65e4
57.25
  • 57.25
  • 44.67
AEIR
  • AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
  • 1.38e4
55.53
  • 55.53
  • 53.83
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.44
  • 53.44
AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000023Segmentation:1-4 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007296presumptive rhombomere 2
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.99e4
  • 1.99e4
33.26
  • 33.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression
Vertebrata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000030449.

Cross-references

EnsemblENSDARG00000030449 (crabp2b)
ZFINZDB-GENE-050208-52 (crabp2b)
EMBLAY702659, CU464180, CU466434
Uniprot/SPTREMBLQ5G9L7, Q5G9L7_DANRE

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