D. rerio Gene: ctps1a - ENSDARG00000030700 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000030700
Namectps1a
DescriptionCTP synthase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-808]
OrganismDanio rerio (zebrafish)
Synonym(s)cb1040, ctps, ctps1, ctpsa, wu:fb49e03, wu:fe17b03
Orthologs(s)20 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
433
  • 433
98.55
  • 98.55
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
459
  • 459
  • 480
  • 542
  • 627
  • 695
  • 824
  • 1.66e3
  • 2.48e3
  • 3.51e3
  • 3.79e3
  • 4.13e3
  • 4.49e3
  • 5.21e3
  • 9.61e3
  • 1.34e4
  • 1.35e4
  • 1.46e4
98.47
  • 98.47
  • 98.40
  • 98.19
  • 97.90
  • 97.68
  • 97.24
  • 94.44
  • 91.69
  • 88.27
  • 87.31
  • 86.19
  • 84.95
  • 82.56
  • 67.83
  • 55.06
  • 54.83
  • 51.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
505
  • 505
98.31
  • 98.31
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
556
  • 556
  • 652
  • 690
  • 733
  • 951
  • 1.04e3
98.14
  • 98.14
  • 97.82
  • 97.69
  • 97.55
  • 96.82
  • 96.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
768
  • 768
  • 769
  • 975
  • 1.58e3
  • 1.63e3
  • 1.66e3
  • 1.85e3
  • 2.09e3
  • 4.03e3
  • 6.74e3
97.43
  • 97.43
  • 97.43
  • 96.74
  • 94.71
  • 94.53
  • 94.44
  • 93.81
  • 92.99
  • 86.51
  • 77.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
961
  • 961
  • 2.26e3
  • 4.00e3
  • 1.23e4
  • 1.29e4
96.79
  • 96.79
  • 92.44
  • 86.59
  • 58.67
  • 56.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.21e3
  • 1.21e3
95.94
  • 95.94
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
1.37e3
  • 1.37e3
  • 1.61e3
  • 3.21e3
  • 3.32e3
  • 4.05e3
95.42
  • 95.42
  • 94.62
  • 89.26
  • 88.87
  • 86.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.63e3
  • 2.63e3
  • 9.65e3
  • 1.49e4
91.21
  • 91.21
  • 67.68
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.67e3
  • 2.67e3
91.06
  • 91.06
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.00e3
  • 3.00e3
89.97
  • 89.97
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.00e3
  • 3.00e3
89.95
  • 89.95
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
  • 7.81e3
89.08
  • 89.08
  • 73.84
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.74e3
  • 3.74e3
  • 1.50e4
87.47
  • 87.47
  • 49.89
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.06e3
  • 4.06e3
86.41
  • 86.41
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.27e3
  • 4.27e3
85.69
  • 85.69
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
4.51e3
  • 4.51e3
  • 5.75e3
  • 6.82e3
84.90
  • 84.90
  • 80.76
  • 77.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.52e3
  • 4.52e3
  • 6.17e3
84.87
  • 84.87
  • 79.35
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.74e3
  • 5.74e3
80.77
  • 80.77
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.82e3
  • 5.82e3
  • 7.17e3
80.53
  • 80.53
  • 75.98
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.97e3
  • 5.97e3
80.01
  • 80.01
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.46e3
  • 6.46e3
78.38
  • 78.38
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.73e3
  • 6.73e3
77.47
  • 77.47
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.76e3
  • 6.76e3
  • 1.21e4
  • 1.28e4
77.37
  • 77.37
  • 59.36
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.79e3
  • 6.79e3
77.26
  • 77.26
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.21e3
  • 7.21e3
75.87
  • 75.87
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.66e3
  • 7.66e3
74.34
  • 74.34
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.67e3
  • 7.67e3
74.33
  • 74.33
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.00e3
  • 8.00e3
73.21
  • 73.21
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
8.04e3
  • 8.04e3
  • 9.25e3
  • 9.67e3
  • 9.67e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
73.07
  • 73.07
  • 69.03
  • 67.63
  • 67.63
  • 67.48
  • 66.65
  • 66.65
  • 66.65
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.43e3
  • 8.43e3
71.77
  • 71.77
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.71e3
  • 8.71e3
70.83
  • 70.83
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.07e3
  • 9.07e3
69.64
  • 69.64
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
  • 1.28e4
  • 1.50e4
59.98
  • 59.98
  • 57.13
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.27e4
  • 1.27e4
57.33
  • 57.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria20 species20 genesCompare expression

Orthology information comes from OMA : ENSDARG00000030700.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000030700.

Cross-references

EnsemblENSDARG00000030700 (ctps1a)
ZFINZDB-GENE-030131-808 (ctps1a)
EMBLCR385068
Uniprot/SPTREMBLA3QJW5, A3QJW5_DANRE

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